RNA–Protein interactions for RNA: ENST00000559389.1

SNX1-206, Transcript of sorting nexin 1, humanhuman

TSL 5

Gene SNX1, Length 753 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-206ENST00000559389 HMGN1P05114 100 aa18.94■□□□□ 0.62
SNX1-206ENST00000559389 OR8G3PP0DMU2 310 aa18.94■□□□□ 0.62
SNX1-206ENST00000559389 NPR2P20594 1047 aa18.94■□□□□ 0.62
SNX1-206ENST00000559389 TUBA1BP68363 451 aa18.94■□□□□ 0.62
SNX1-206ENST00000559389 TUBA4AP68366 448 aa18.94■□□□□ 0.62
SNX1-206ENST00000559389 NPRL3Q12980 569 aa18.94■□□□□ 0.62
SNX1-206ENST00000559389 DAZAP2Q15038 168 aaPredicted RBP18.94■□□□□ 0.62
SNX1-206ENST00000559389 C12orf73Q69YU5 71 aa18.94■□□□□ 0.62
SNX1-206ENST00000559389 ZNF787Q6DD87 383 aa18.94■□□□□ 0.62
SNX1-206ENST00000559389 TUBA1AQ71U36 451 aa18.94■□□□□ 0.62
SNX1-206ENST00000559389 ZBTB46Q86UZ6 589 aa18.94■□□□□ 0.62
SNX1-206ENST00000559389 NANOS1Q8WY41 292 aaKnown RBP18.94■□□□□ 0.62
SNX1-206ENST00000559389 TEX12Q9BXU0 123 aa18.94■□□□□ 0.62
SNX1-206ENST00000559389 NMNAT2Q9BZQ4 307 aa18.94■□□□□ 0.62
SNX1-206ENST00000559389 RERGLQ9H628 205 aa18.94■□□□□ 0.62
SNX1-206ENST00000559389 NKX1-2Q9UD57 310 aaPredicted RBP18.94■□□□□ 0.62
SNX1-206ENST00000559389 ANKHD1Q8IWZ3 2542 aaKnown RBP18.93■□□□□ 0.62
SNX1-206ENST00000559389 DEFB108AA8MXU0 73 aa18.93■□□□□ 0.62
SNX1-206ENST00000559389 CASKO14936 926 aa18.93■□□□□ 0.62
SNX1-206ENST00000559389 SIAH2O43255 324 aa18.93■□□□□ 0.62
SNX1-206ENST00000559389 GOSR1O95249 250 aa18.93■□□□□ 0.62
SNX1-206ENST00000559389 FARS2O95363 451 aaKnown RBP18.93■□□□□ 0.62
SNX1-206ENST00000559389 GAAP10253 952 aa18.93■□□□□ 0.62
SNX1-206ENST00000559389 POLR2IP36954 125 aaKnown RBP18.93■□□□□ 0.62
SNX1-206ENST00000559389 SLC25A1P53007 311 aa18.93■□□□□ 0.62
SNX1-206ENST00000559389 DBPQ10586 325 aaPredicted RBP18.93■□□□□ 0.62
SNX1-206ENST00000559389 LPCAT4Q643R3 524 aa18.93■□□□□ 0.62
SNX1-206ENST00000559389 GLB1L2Q8IW92 636 aa18.93■□□□□ 0.62
SNX1-206ENST00000559389 SKA3Q8IX90 412 aa18.93■□□□□ 0.62
SNX1-206ENST00000559389 OR9Q1Q8NGQ5 310 aa18.93■□□□□ 0.62
SNX1-206ENST00000559389 SLC38A2Q96QD8 506 aa18.93■□□□□ 0.62
SNX1-206ENST00000559389 PRRG3Q9BZD7 231 aa18.93■□□□□ 0.62
SNX1-206ENST00000559389 SIAEQ9HAT2 523 aa18.93■□□□□ 0.62
SNX1-206ENST00000559389 NOX3Q9HBY0 568 aa18.93■□□□□ 0.62
SNX1-206ENST00000559389 C8orf4Q9NR00 106 aa18.93■□□□□ 0.62
SNX1-206ENST00000559389 POLE4Q9NR33 117 aa18.93■□□□□ 0.62
SNX1-206ENST00000559389 B9D1Q9UPM9 204 aa18.93■□□□□ 0.62
SNX1-206ENST00000559389 COA3Q9Y2R0 106 aaPredicted RBP18.93■□□□□ 0.62
SNX1-206ENST00000559389 A6NNC1 897 aa18.92■□□□□ 0.62
SNX1-206ENST00000559389 MGRN1O60291 552 aa18.92■□□□□ 0.62
SNX1-206ENST00000559389 HLA-HP01893 362 aa18.92■□□□□ 0.62
SNX1-206ENST00000559389 MSR1P21757 451 aa18.92■□□□□ 0.62
SNX1-206ENST00000559389 LAP3P28838 519 aa18.92■□□□□ 0.62
SNX1-206ENST00000559389 BEX5Q5H9J7 111 aa18.92■□□□□ 0.62
SNX1-206ENST00000559389 OGFRL1Q5TC84 451 aaPredicted RBP18.92■□□□□ 0.62
SNX1-206ENST00000559389 ALKBH2Q6NS38 261 aa18.92■□□□□ 0.62
SNX1-206ENST00000559389 ZNF295-AS1Q8N0V1 137 aa18.92■□□□□ 0.62
SNX1-206ENST00000559389 OR2T4Q8NH00 348 aa18.92■□□□□ 0.62
SNX1-206ENST00000559389 MARVELD3Q96A59 401 aa18.92■□□□□ 0.62
SNX1-206ENST00000559389 C14orf79Q96F83 325 aa18.92■□□□□ 0.62
SNX1-206ENST00000559389 FOXN4Q96NZ1 517 aa18.92■□□□□ 0.62
SNX1-206ENST00000559389 MBOAT4Q96T53 435 aa18.92■□□□□ 0.62
SNX1-206ENST00000559389 SH3GL3Q99963 347 aa18.92■□□□□ 0.62
SNX1-206ENST00000559389 SEC61A2Q9H9S3 476 aa18.92■□□□□ 0.62
SNX1-206ENST00000559389 MOV10Q9HCE1 1003 aaKnown RBP18.92■□□□□ 0.62
SNX1-206ENST00000559389 NGBQ9NPG2 151 aa18.92■□□□□ 0.62
SNX1-206ENST00000559389 B3GNT2Q9NY97 397 aa18.92■□□□□ 0.62
SNX1-206ENST00000559389 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP18.91■□□□□ 0.62
SNX1-206ENST00000559389 E9PQ18 207 aa18.91■□□□□ 0.62
SNX1-206ENST00000559389 UBL3O95164 117 aa18.91■□□□□ 0.62
SNX1-206ENST00000559389 PAX7P23759 505 aa18.91■□□□□ 0.62
SNX1-206ENST00000559389 LOXP28300 417 aaPredicted RBP18.91■□□□□ 0.62
SNX1-206ENST00000559389 CAPZA2P47755 286 aa18.91■□□□□ 0.62
SNX1-206ENST00000559389 ZNF83P51522 516 aa18.91■□□□□ 0.62
SNX1-206ENST00000559389 SLC34A1Q06495 639 aa18.91■□□□□ 0.62
SNX1-206ENST00000559389 LRRC36Q1X8D7 754 aa18.91■□□□□ 0.62
SNX1-206ENST00000559389 FAM27BQ5VT28 67 aa18.91■□□□□ 0.62
SNX1-206ENST00000559389 DPPA2Q7Z7J5 298 aa18.91■□□□□ 0.62
SNX1-206ENST00000559389 MDP1Q86V88 176 aa18.91■□□□□ 0.62
SNX1-206ENST00000559389 PACRGLQ8N7B6 248 aa18.91■□□□□ 0.62
SNX1-206ENST00000559389 FAM169BQ8N8A8 192 aa18.91■□□□□ 0.62
SNX1-206ENST00000559389 PLEKHA8Q96JA3 519 aa18.91■□□□□ 0.62
SNX1-206ENST00000559389 HCAR1Q9BXC0 346 aa18.91■□□□□ 0.62
SNX1-206ENST00000559389 TOR3AQ9H497 397 aa18.91■□□□□ 0.62
SNX1-206ENST00000559389 SRA1Q9HD15 236 aaKnown RBP18.91■□□□□ 0.62
SNX1-206ENST00000559389 TVP23BQ9NYZ1 205 aa18.91■□□□□ 0.62
SNX1-206ENST00000559389 CRNNQ9UBG3 495 aaPredicted RBP18.91■□□□□ 0.62
SNX1-206ENST00000559389 FAM221AA4D161 298 aa18.9■□□□□ 0.62
SNX1-206ENST00000559389 FAM183AA6NL82 134 aa18.9■□□□□ 0.62
SNX1-206ENST00000559389 IGKV3-15P01624 115 aa18.9■□□□□ 0.62
SNX1-206ENST00000559389 HRGP04196 525 aa18.9■□□□□ 0.62
SNX1-206ENST00000559389 SCG5P05408 212 aa18.9■□□□□ 0.62
SNX1-206ENST00000559389 SPI1P17947 270 aa18.9■□□□□ 0.62
SNX1-206ENST00000559389 PAICSP22234 425 aaKnown RBP18.9■□□□□ 0.62
SNX1-206ENST00000559389 PYCR1P32322 319 aa18.9■□□□□ 0.62
SNX1-206ENST00000559389 GLO1Q04760 184 aa18.9■□□□□ 0.62
SNX1-206ENST00000559389 ENDOGQ14249 297 aaKnown RBP18.9■□□□□ 0.62
SNX1-206ENST00000559389 SNAPC1Q16533 368 aa18.9■□□□□ 0.62
SNX1-206ENST00000559389 SGCAQ16586 387 aa18.9■□□□□ 0.62
SNX1-206ENST00000559389 GSG1Q2KHT4 349 aa18.9■□□□□ 0.62
SNX1-206ENST00000559389 ZIK1Q3SY52 487 aaPredicted RBP18.9■□□□□ 0.62
SNX1-206ENST00000559389 SLC16A14Q7RTX9 510 aa18.9■□□□□ 0.62
SNX1-206ENST00000559389 SLC26A10Q8NG04 563 aa18.9■□□□□ 0.62
SNX1-206ENST00000559389 FGFBP3Q8TAT2 258 aa18.9■□□□□ 0.62
SNX1-206ENST00000559389 RDH12Q96NR8 316 aa18.9■□□□□ 0.62
SNX1-206ENST00000559389 GRIP2Q9C0E4 1043 aa18.9■□□□□ 0.62
SNX1-206ENST00000559389 HINT3Q9NQE9 182 aaKnown RBP18.9■□□□□ 0.62
SNX1-206ENST00000559389 RRP15Q9Y3B9 282 aaKnown RBP18.9■□□□□ 0.62
SNX1-206ENST00000559389 BAHCC1Q9P281 2608 aa18.9■□□□□ 0.62
SNX1-206ENST00000559389 ADGRG4Q8IZF6 3080 aa18.89■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms