RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 GID4Q8IVV7 300 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 GLB1L2Q8IW92 636 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 TCEANCQ8N8B7 351 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 PROKR2Q8NFJ6 384 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 OR10H5Q8NGA6 315 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 OR1K1Q8NGR3 316 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 FAM81AQ8TBF8 368 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 TMEM163Q8TC26 289 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 NSMAFQ92636 917 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 RFKQ969G6 155 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 NMD3Q96D46 503 aaKnown RBP8.12□□□□□ -1.11
LDLR-210ENST00000559340 BOD1Q96IK1 185 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 PITX2Q99697 317 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 NUAK2Q9H093 628 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 RACGAP1Q9H0H5 632 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 SEC61A2Q9H9S3 476 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 SIAEQ9HAT2 523 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 RPRD1BQ9NQG5 326 aaKnown RBP8.12□□□□□ -1.11
LDLR-210ENST00000559340 TMEM38BQ9NVV0 291 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 CLN6Q9NWW5 311 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 KCNG2Q9UJ96 466 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 FBXL3Q9UKT7 428 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 NDRG4Q9ULP0 352 aaKnown RBP8.12□□□□□ -1.11
LDLR-210ENST00000559340 DOPEY1Q5JWR5 2465 aa8.12□□□□□ -1.11
LDLR-210ENST00000559340 A0A1W2PPL8 197 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 OR6C68A6NDL8 312 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 TUBAL3A6NHL2 446 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 C12orf71A8MTZ7 269 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 H7C1C5 153 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 PRODHO43272 600 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 RAD51DO75771 328 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 LYZL6O75951 148 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 UBL3O95164 117 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 HLA-DQA2P01906 255 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 HRGP04196 525 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 ITGA5P08648 1049 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 MSR1P21757 451 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 EDNRAP25101 427 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 EPHA2P29317 976 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 POLR2IP36954 125 aaKnown RBP8.11□□□□□ -1.11
LDLR-210ENST00000559340 RPS7P62081 194 aaKnown RBP8.11□□□□□ -1.11
LDLR-210ENST00000559340 SNRPGP62308 76 aaKnown RBP8.11□□□□□ -1.11
LDLR-210ENST00000559340 LSM6P62312 80 aaKnown RBP8.11□□□□□ -1.11
LDLR-210ENST00000559340 LCN6P62502 163 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 HSF2Q03933 536 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 CRMP1Q14194 572 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 GABRA6Q16445 453 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 SGCAQ16586 387 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 TBRG1Q3YBR2 411 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 SLC36A2Q495M3 483 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 PHYHD1Q5SRE7 291 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 ZNF362Q5T0B9 420 aaPredicted RBP8.11□□□□□ -1.11
LDLR-210ENST00000559340 C9orf135Q5VTT2 229 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 NXNL2Q5VZ03 156 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 FBXW10Q5XX13 1052 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 TMEM53Q6P2H8 277 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 PLBD1Q6P4A8 553 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 FOXL2NBQ6ZUU3 175 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 SYT9Q86SS6 491 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 CPOQ8IVL8 374 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 OR6V1Q8N148 313 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 SLC22A24Q8N4F4 322 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 CYB561A3Q8NBI2 242 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 NRG4Q8WWG1 115 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 BCL2L2Q92843 193 aaPredicted RBP8.11□□□□□ -1.11
LDLR-210ENST00000559340 MBOAT4Q96T53 435 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 DDOQ99489 341 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 ADI1Q9BV57 179 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 CDADC1Q9BWV3 514 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 ACTR6Q9GZN1 396 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 OR51V1Q9H2C8 321 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 NELFAQ9H3P2 528 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 Q9H521 79 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 RNF121Q9H920 327 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 CCNB1IP1Q9NPC3 277 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 SLC17A5Q9NRA2 495 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 ZNF226Q9NYT6 803 aa8.11□□□□□ -1.11
LDLR-210ENST00000559340 COA3Q9Y2R0 106 aaPredicted RBP8.11□□□□□ -1.11
LDLR-210ENST00000559340 ABCA4P78363 2273 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 CADP27708 2225 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 ARPC4-TTLL3A0A0A6YYG9 625 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 OR5H1A6NKK0 313 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 SLC22A31A6NKX4 558 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 PRSS44E7EML9 344 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 GLCEO94923 617 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 SLC2A10O95528 541 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 PTHP01270 115 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 CST2P09228 141 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 CTLA4P16410 223 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 SPI1P17947 270 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 ARR3P36575 388 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 CAPZA2P47755 286 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 ADARB1P78563 741 aaKnown RBP8.1□□□□□ -1.11
LDLR-210ENST00000559340 IL5RAQ01344 420 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 PLP2Q04941 152 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 FMODQ06828 376 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 KCNMB1Q16558 191 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 OCLNQ16625 522 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 KLHL12Q53G59 568 aa8.1□□□□□ -1.11
LDLR-210ENST00000559340 SLC25A30Q5SVS4 291 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms