RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 CRYBA1P05813 215 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 CISD3P0C7P0 127 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 MAPK3P27361 379 aaPredicted RBP10.29□□□□□ -0.76
LDLR-208ENST00000558518 RPS27AP62979 156 aaKnown RBP10.29□□□□□ -0.76
LDLR-208ENST00000558518 UBA52P62987 128 aaKnown RBP10.29□□□□□ -0.76
LDLR-208ENST00000558518 C1orf61Q13536 156 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 NR0B2Q15466 257 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 RNASE10Q5GAN6 216 aaKnown RBP10.29□□□□□ -0.76
LDLR-208ENST00000558518 NKAIN2Q5VXU1 208 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 ANKRD33Q7Z3H0 272 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 CRIPAKQ8N1N5 446 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 UQCC2Q9BRT2 126 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 NRSN2Q9GZP1 204 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 ZBP1Q9H171 429 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 UPB1Q9UBR1 384 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 ENTPD2Q9Y5L3 495 aa10.29□□□□□ -0.76
LDLR-208ENST00000558518 CTDSPLO15194 276 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 RNGTTO60942 597 aaKnown RBP10.28□□□□□ -0.76
LDLR-208ENST00000558518 ZNF432O94892 652 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 HTR3BO95264 441 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 IL5P05113 134 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 SFTPBP07988 381 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 DAOP14920 347 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 CD53P19397 219 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 RAB13P51153 203 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 PRMT2P55345 433 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 MOGAT2Q3SYC2 334 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 NKAPLQ5M9Q1 402 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 PRAMEF8Q5VWM4 474 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 PRAMEF7Q5VXH5 474 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 ZNF585AQ6P3V2 769 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 CBLN3Q6UW01 205 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 RAB11FIP2Q7L804 512 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 SLC36A1Q7Z2H8 476 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 LINC00346Q8IVM7 164 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 FAM3CQ92520 227 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 CCDC74AQ96AQ1 378 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 SLC25A44Q96H78 314 aaPredicted RBP10.28□□□□□ -0.76
LDLR-208ENST00000558518 RSRP1Q9BUV0 290 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 IGFLR1Q9H665 355 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 EMC3Q9P0I2 261 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 DHDHQ9UQ10 334 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 TMED7Q9Y3B3 224 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 COL4A6Q14031 1691 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 UNC13CQ8NB66 2214 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 HMSDA8MTL9 139 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 PMP2P02689 132 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 MGMTP16455 207 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 MPGP29372 298 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 PPM1AP35813 382 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 ID4P47928 161 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 PPP1R1AQ13522 171 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 C1QL3Q5VWW1 255 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 LCN10Q6JVE6 187 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 NAXEQ8NCW5 288 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 RCBTB1Q8NDN9 531 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 ISOC2Q96AB3 205 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 GAS2L1Q99501 681 aaPredicted RBP10.28□□□□□ -0.76
LDLR-208ENST00000558518 FAM83CQ9BQN1 747 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 CHRDQ9H2X0 955 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 CKLFQ9UBR5 152 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 ZNF629Q9UEG4 869 aaPredicted RBP10.28□□□□□ -0.76
LDLR-208ENST00000558518 LRRK1Q38SD2 2015 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 COL4A3Q01955 1670 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 URADA6NGE7 173 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 M0R036 132 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 BRINP1O60477 761 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 GLCEO94923 617 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 GPR75O95800 540 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 CEACAM5P06731 702 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 THBS1P07996 1170 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 PPIAP62937 165 aaKnown RBP10.28□□□□□ -0.76
LDLR-208ENST00000558518 BTG2P78543 158 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 HFEQ30201 348 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 WDR38Q5JTN6 314 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 CLEC9AQ6UXN8 241 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 SLC39A5Q6ZMH5 540 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 ABHD13Q7L211 337 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 OR6K3Q8NGY3 331 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 GAREM1Q9H706 876 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 METTL8Q9H825 291 aaKnown RBP10.28□□□□□ -0.76
LDLR-208ENST00000558518 HRASLS2Q9NWW9 162 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 PURGQ9UJV8 347 aaKnown RBP10.28□□□□□ -0.76
LDLR-208ENST00000558518 CSAG2Q9Y5P2 127 aa10.28□□□□□ -0.76
LDLR-208ENST00000558518 PRSS44E7EML9 344 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 SLC16A7O60669 478 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 MPZL1O95297 269 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 SCGB1D2O95969 90 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 OPN1LWP04000 364 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 GLI4P10075 376 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 MAOAP21397 527 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 ZNF10P21506 573 aaPredicted RBP10.27□□□□□ -0.76
LDLR-208ENST00000558518 AGTR1P30556 359 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 DRD3P35462 400 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 PPT1P50897 306 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 PLAURQ03405 335 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 CNKSR3Q6P9H4 555 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 CORO6Q6QEF8 472 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 ETFBKMTQ8IXQ9 262 aa10.27□□□□□ -0.76
LDLR-208ENST00000558518 OR6N1Q8NGY5 312 aa10.27□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms