RNA–Protein interactions for RNA: ENST00000555563.5

SHMT2-219, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-219ENST00000555563 TMCC3Q9ULS5 477 aa11.87□□□□□ -0.51
SHMT2-219ENST00000555563 A0A1W2PPL8 197 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 SLC22A23A1A5C7 686 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 H7C1Q1 480 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 XKRYO14609 159 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 ACOT8O14734 319 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 GYG2O15488 501 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 SERPINA5P05154 406 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 MMP7P09237 267 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-219ENST00000555563 FOSL1P15407 271 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 NPR2P20594 1047 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 SDHAP31040 664 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 THBS4P35443 961 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 GSSP48637 474 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 CHRNB3Q05901 458 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 DAG1Q14118 895 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 ETFDHQ16134 617 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 SWI5Q1ZZU3 235 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 FAM98BQ52LJ0 330 aaKnown RBP11.86□□□□□ -0.51
SHMT2-219ENST00000555563 GPR139Q6DWJ6 353 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 TMEM53Q6P2H8 277 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 PGBD2Q6P3X8 592 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 SMARCD3Q6STE5 483 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 DPY19L2P2Q6ZN68 376 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 FOXL2NBQ6ZUU3 175 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 OR9Q2Q8NGE9 314 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 OR4C15Q8NGM1 316 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 COX4I2Q96KJ9 171 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 LRGUKQ96M69 825 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 RBP7Q96R05 134 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 TRIM15Q9C019 465 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 OR52D1Q9H346 318 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 RNF121Q9H920 327 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 SIAEQ9HAT2 523 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 BARX1Q9HBU1 254 aaPredicted RBP11.86□□□□□ -0.51
SHMT2-219ENST00000555563 VNN3Q9NY84 501 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 IER3IP1Q9Y5U9 82 aa11.86□□□□□ -0.51
SHMT2-219ENST00000555563 PRSS37A4D1T9 235 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 TNFRSF11BO00300 401 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 SOCS2O14508 198 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 IMPA2O14732 288 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 GPRIN2O60269 458 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 KRT36O76013 467 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 STAMBPO95630 424 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 PPP1R3DO95685 299 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 INHBBP09529 407 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 CTLA4P16410 223 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 HOXB4P17483 251 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-219ENST00000555563 NR4A1P22736 598 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 IFNGR2P38484 337 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 SNRPD2P62316 118 aaKnown RBP11.85□□□□□ -0.51
SHMT2-219ENST00000555563 TRAP1Q12931 704 aaKnown RBP11.85□□□□□ -0.51
SHMT2-219ENST00000555563 EFNB3Q15768 340 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 SGCAQ16586 387 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 MSMPQ1L6U9 139 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 CLEC12BQ2HXU8 276 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 C1orf94Q6P1W5 598 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 ZNF620Q6ZNG0 422 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 ADGRG5Q8IZF4 528 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 PAQR4Q8N4S7 273 aaPredicted RBP11.85□□□□□ -0.51
SHMT2-219ENST00000555563 SLC30A7Q8NEW0 376 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 BTBD10Q9BSF8 475 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 BDH2Q9BUT1 245 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 SYT4Q9H2B2 425 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 CCNB1IP1Q9NPC3 277 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 MTORP42345 2549 aa11.85□□□□□ -0.51
SHMT2-219ENST00000555563 B9A039 149 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 SMAD7O15105 426 aaKnown RBP11.84□□□□□ -0.51
SHMT2-219ENST00000555563 AHCYL1O43865 530 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 SSX4O60224 188 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 MGRN1O60291 552 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 BMP4P12644 408 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 CCL2P13500 99 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 APEHP13798 732 aaKnown RBP11.84□□□□□ -0.51
SHMT2-219ENST00000555563 ZNF32P17041 273 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 MSR1P21757 451 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 LAP3P28838 519 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 SLC6A6P31641 620 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 RPS6KA3P51812 740 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 HMGA2P52926 109 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 NUDT6P53370 316 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 GALK2Q01415 458 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 PPP1R8Q12972 351 aaKnown RBP11.84□□□□□ -0.51
SHMT2-219ENST00000555563 BNIP1Q12981 228 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 TSPAN31Q12999 210 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 TNK1Q13470 666 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 ENDOGQ14249 297 aaKnown RBP11.84□□□□□ -0.51
SHMT2-219ENST00000555563 PABPC1L2AQ5JQF8 200 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 FAM27BQ5VT28 67 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 OR2T5Q6IEZ7 315 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 ZNF770Q6IQ21 691 aaPredicted RBP11.84□□□□□ -0.51
SHMT2-219ENST00000555563 PGM2L1Q6PCE3 622 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 DNM1P46Q6ZS02 220 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 PTCHD4Q6ZW05 846 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 ADCK1Q86TW2 530 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 SVOPLQ8N434 492 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 OR2T29Q8NH02 315 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 GNPDA2Q8TDQ7 276 aa11.84□□□□□ -0.51
SHMT2-219ENST00000555563 POP5Q969H6 163 aaKnown RBP11.84□□□□□ -0.51
SHMT2-219ENST00000555563 FOXN4Q96NZ1 517 aa11.84□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 24.6 ms