RNA–Protein interactions for RNA: ENST00000554051.1

CCDC88C-207, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 478 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-207ENST00000554051 SERPINA5P05154 406 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 ZNF14P17017 642 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 MSR1P21757 451 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 NOS3P29474 1203 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 GIPRP48546 466 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 PTH2RP49190 550 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 FABP6P51161 128 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 ARHGDIAP52565 204 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 SNRPD2P62316 118 aaKnown RBP12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 NKX6-1P78426 367 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 MYBPC1Q00872 1141 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 HSF2Q03933 536 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 FMODQ06828 376 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 MICAQ29983 383 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 PGGHGQ32M88 737 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 MESTQ5EB52 335 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 FAM27BQ5VT28 67 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 ZNF770Q6IQ21 691 aaPredicted RBP12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 CCDC121Q6ZUS5 278 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 SYT9Q86SS6 491 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 SKA3Q8IX90 412 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 AQP11Q8NBQ7 271 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 CANT1Q8WVQ1 401 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 DNAJC9Q8WXX5 260 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 IFT27Q9BW83 186 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 RNF121Q9H920 327 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 CA10Q9NS85 328 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 ZNF224Q9NZL3 707 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 UGT2A1Q9Y4X1 527 aa12.49□□□□□ -0.41
CCDC88C-207ENST00000554051 ZNF503-AS2A6NEH8 195 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 C12orf71A8MTZ7 269 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 E7EQL1 145 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 FKBP6O75344 327 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 DEAF1O75398 565 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 E2F6O75461 281 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 KHDRBS3O75525 346 aaKnown RBP12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 SNAP29O95721 258 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 RENP00797 406 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 SOD3P08294 240 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 CST2P09228 141 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 FCGR1AP12314 374 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 ZNF26P17031 533 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 SCRN3Q0VDG4 424 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 COX10Q12887 443 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 EFNB3Q15768 340 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 TBC1D28Q2M2D7 210 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 Q5PR19 223 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 B3GLCTQ6Y288 498 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 THSD4Q6ZMP0 1018 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 RASSF6Q6ZTQ3 369 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 TGIF2LYQ8IUE0 185 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 C1orf174Q8IYL3 243 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 PAPD5Q8NDF8 572 aaKnown RBP12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 OR10G2Q8NGC3 310 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 OR9Q2Q8NGE9 314 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 NSMAFQ92636 917 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 NEUROG1Q92886 237 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 NABP1Q96AH0 204 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 ERMAPQ96PL5 475 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 NOX3Q9HBY0 568 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 TBC1D23Q9NUY8 699 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 DNAJB9Q9UBS3 223 aa12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 HRNRQ86YZ3 2850 aaPredicted RBP12.48□□□□□ -0.41
CCDC88C-207ENST00000554051 PRRC2AP48634 2157 aaKnown RBP12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 PRR14LQ5THK1 2151 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 A0A1W2PPL8 197 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 H7C417 338 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 EBAG9O00559 213 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 SOCS2O14508 198 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 PPP1R3DO95685 299 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 ERCC1P07992 297 aaPredicted RBP12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 ATP5J2P56134 94 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 FXYD6P3P58550 94 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 CBX1P83916 185 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 PIGFQ07326 219 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 DAG1Q14118 895 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 C1orf146Q5VVC0 180 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 CD300LDQ6UXZ3 194 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 GLB1L2Q8IW92 636 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 ALDH16A1Q8IZ83 802 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 SLC30A7Q8NEW0 376 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 GIPC3Q8TF64 312 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 RASD2Q96D21 266 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 PERPQ96FX8 193 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 ZNF75AQ96N20 296 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 GPA33Q99795 319 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 SH3GL3Q99963 347 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 RACGAP1Q9H0H5 632 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 SYT4Q9H2B2 425 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 SEC61A2Q9H9S3 476 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 ZNF556Q9HAH1 456 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 CDH20Q9HBT6 801 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 POLE4Q9NR33 117 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 IL20Q9NYY1 176 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 NDRG4Q9ULP0 352 aaKnown RBP12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 IER3IP1Q9Y5U9 82 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 PMF1-BGLAPU3KQ54 211 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 U3KQV3 271 aa12.47□□□□□ -0.41
CCDC88C-207ENST00000554051 CADP27708 2225 aa12.46□□□□□ -0.41
CCDC88C-207ENST00000554051 LRBAP50851 2863 aa12.46□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms