RNA–Protein interactions for RNA: ENST00000550592.1

LIMA1-205, Transcript of LIM domain and actin binding 1, humanhuman

TSL 4

Gene LIMA1, Length 567 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-205ENST00000550592 RNF2Q99496 336 aa3.42□□□□□ -1.86
LIMA1-205ENST00000550592 HIST1H4GQ99525 98 aa3.42□□□□□ -1.86
LIMA1-205ENST00000550592 COPS8Q99627 209 aa3.42□□□□□ -1.86
LIMA1-205ENST00000550592 EBF4Q9BQW3 602 aa3.42□□□□□ -1.86
LIMA1-205ENST00000550592 C8orf33Q9H7E9 229 aaPredicted RBP3.42□□□□□ -1.86
LIMA1-205ENST00000550592 NHEJ1Q9H9Q4 299 aaPredicted RBP3.42□□□□□ -1.86
LIMA1-205ENST00000550592 BTNL2Q9UIR0 455 aa3.42□□□□□ -1.86
LIMA1-205ENST00000550592 PIGLQ9Y2B2 252 aa3.42□□□□□ -1.86
LIMA1-205ENST00000550592 IFT52Q9Y366 437 aa3.42□□□□□ -1.86
LIMA1-205ENST00000550592 MYH8P13535 1937 aa3.42□□□□□ -1.86
LIMA1-205ENST00000550592 IGSF9BQ9UPX0 1349 aa3.42□□□□□ -1.86
LIMA1-205ENST00000550592 NBPF19A0A087WUL8 3843 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 LCTP09848 1927 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 MTCL1Q9Y4B5 1905 aaKnown RBP3.41□□□□□ -1.86
LIMA1-205ENST00000550592 IGHV1OR21-1A0A087WYE8 117 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 FAM240BA0A1B0GVZ2 78 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 MED7O43513 233 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 PALMO75781 387 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 CLDN9O95484 217 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 TSPAN12O95859 305 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 SFTPCP11686 197 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 ZNF19P17023 458 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 GABRR1P24046 479 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 HTR1FP30939 366 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 KIR2DS4P43632 304 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 ATP1B3P54709 279 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 SNAP25P60880 206 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 RPL23AP62750 156 aaKnown RBP3.41□□□□□ -1.86
LIMA1-205ENST00000550592 CSNK1G2P78368 415 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 ZNF79Q15937 498 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 DUSP7Q16829 419 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 FILIP1LQ4L180 1135 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 C1orf146Q5VVC0 180 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 TGIF2LYQ8IUE0 185 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 FAM83FQ8NEG4 500 aaPredicted RBP3.41□□□□□ -1.86
LIMA1-205ENST00000550592 OR4K14Q8NGD5 310 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 OR52H1Q8NGJ2 320 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 OR13C2Q8NGS9 318 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 BRSK1Q8TDC3 778 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 FRAT1Q92837 279 aaPredicted RBP3.41□□□□□ -1.86
LIMA1-205ENST00000550592 NT5C3BQ969T7 300 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 TIMD4Q96H15 378 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 OXGR1Q96P68 337 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 CLCC1Q96S66 551 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 RIOK1Q9BRS2 568 aaKnown RBP3.41□□□□□ -1.86
LIMA1-205ENST00000550592 PLA2G2FQ9BZM2 168 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 OR51J1Q9H342 316 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 SGK2Q9HBY8 427 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 ZFP14Q9HCL3 533 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 STAP1Q9ULZ2 295 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 RPL36Q9Y3U8 105 aaKnown RBP3.41□□□□□ -1.86
LIMA1-205ENST00000550592 IKBKGQ9Y6K9 419 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 V9GY05 133 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 TP53BP1Q12888 1972 aaPredicted RBP3.41□□□□□ -1.86
LIMA1-205ENST00000550592 PHLPP2Q6ZVD8 1323 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 FLNCQ14315 2725 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 MGAQ8IWI9 3026 aa3.41□□□□□ -1.86
LIMA1-205ENST00000550592 IGHV3OR16-13A0A075B7E8 117 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 A0A0J9YXY3 114 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 TCRBV9S1A1TA0A576 114 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 VPS37CA5D8V6 355 aaPredicted RBP3.4□□□□□ -1.87
LIMA1-205ENST00000550592 FAM231BA6NCW3 169 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 A8MU10 97 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 GFYI3L273 518 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 UGT1A9O60656 530 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 ZNF780AO75290 641 aaPredicted RBP3.4□□□□□ -1.87
LIMA1-205ENST00000550592 MMP23AO75900 390 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 PSMC3P17980 439 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 GDI1P31150 447 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 TAGLN2P37802 199 aaKnown RBP3.4□□□□□ -1.87
LIMA1-205ENST00000550592 OPRD1P41143 372 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 NOVP48745 357 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 SEC61GP60059 68 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 ORC2Q13416 577 aaPredicted RBP3.4□□□□□ -1.87
LIMA1-205ENST00000550592 OXA1LQ15070 435 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 PARP15Q460N3 678 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 OR52E8Q6IFG1 317 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 HSDL2Q6YN16 418 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 ERI1Q8IV48 349 aaKnown RBP3.4□□□□□ -1.87
LIMA1-205ENST00000550592 RDH10Q8IZV5 341 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 C6orf223Q8N319 242 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 NKAPP1Q8N9T2 125 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 OR2L5Q8NG80 312 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 ITFG1Q8TB96 612 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 ANP32BQ92688 251 aaKnown RBP3.4□□□□□ -1.87
LIMA1-205ENST00000550592 CXorf40BQ96DE9 158 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 GCOM2Q9BZD3 368 aaPredicted RBP3.4□□□□□ -1.87
LIMA1-205ENST00000550592 RBKSQ9H477 322 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 TREM2Q9NZC2 230 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 HPCAL4Q9UM19 191 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 ZNF256Q9Y2P7 627 aaPredicted RBP3.4□□□□□ -1.87
LIMA1-205ENST00000550592 MUC22E2RYF6 1773 aaPredicted RBP3.4□□□□□ -1.87
LIMA1-205ENST00000550592 CCDC171Q6TFL3 1326 aa3.4□□□□□ -1.87
LIMA1-205ENST00000550592 DNHD1Q96M86 4753 aa3.39□□□□□ -1.87
LIMA1-205ENST00000550592 LRRK1Q38SD2 2015 aa3.39□□□□□ -1.87
LIMA1-205ENST00000550592 ANKHD1Q8IWZ3 2542 aaKnown RBP3.39□□□□□ -1.87
LIMA1-205ENST00000550592 RTTNQ86VV8 2226 aa3.39□□□□□ -1.87
LIMA1-205ENST00000550592 IQANK1A0A1B0GTG1 560 aa3.39□□□□□ -1.87
LIMA1-205ENST00000550592 OR52A4PA6NMU1 304 aa3.39□□□□□ -1.87
LIMA1-205ENST00000550592 A8MXQ7 604 aa3.39□□□□□ -1.87
Retrieved 100 of 20,778 RNA–protein pairs in 37.9 ms