RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 ZNF227Q86WZ6 799 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 ZNF595Q8IYB9 648 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 FAM3DQ96BQ1 224 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 NUDT22Q9BRQ3 303 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 NUDT9Q9BW91 350 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 KCNN3Q9UGI6 736 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 PRRC2CQ9Y520 2896 aaKnown RBP13.57□□□□□ -0.24
USP28-214ENST00000545540 TMEM272A0A1B0GTI8 110 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 GGT3PA6NGU5 568 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 RENP00797 406 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 IFNGR1P15260 489 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 PRKACBP22694 351 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 YPEL5P62699 121 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 SLC35D3Q5M8T2 416 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 SLC6A19Q695T7 634 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 ACBD4Q8NC06 268 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 RBPMSQ93062 196 aaKnown RBP13.57□□□□□ -0.24
USP28-214ENST00000545540 KLHL15Q96M94 604 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 EMC6Q9BV81 110 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 EMC9Q9Y3B6 208 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 HOXC4P09017 264 aaPredicted RBP13.57□□□□□ -0.24
USP28-214ENST00000545540 ZNF626Q68DY1 528 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 KRT77Q7Z794 578 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 GALNT16Q8N428 558 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 HOXB13Q92826 284 aaPredicted RBP13.57□□□□□ -0.24
USP28-214ENST00000545540 STEAP1Q9UHE8 339 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 VDAC3Q9Y277 283 aa13.57□□□□□ -0.24
USP28-214ENST00000545540 COA3Q9Y2R0 106 aaPredicted RBP13.57□□□□□ -0.24
USP28-214ENST00000545540 TMEM150CB9EJG8 249 aa13.56□□□□□ -0.24
USP28-214ENST00000545540 SLC25A12O75746 678 aa13.56□□□□□ -0.24
USP28-214ENST00000545540 RRASP10301 218 aa13.56□□□□□ -0.24
USP28-214ENST00000545540 ACHEP22303 614 aa13.56□□□□□ -0.24
USP28-214ENST00000545540 IL12BP29460 328 aa13.56□□□□□ -0.24
USP28-214ENST00000545540 HLXQ14774 488 aaPredicted RBP13.56□□□□□ -0.24
USP28-214ENST00000545540 CLLU1Q5K131 121 aa13.56□□□□□ -0.24
USP28-214ENST00000545540 FAM69BQ5VUD6 431 aa13.56□□□□□ -0.24
USP28-214ENST00000545540 C7orf50Q9BRJ6 194 aaKnown RBP13.56□□□□□ -0.24
USP28-214ENST00000545540 MRPL22Q9NWU5 206 aaKnown RBP13.56□□□□□ -0.24
USP28-214ENST00000545540 TMEM235A6NFC5 223 aa13.56□□□□□ -0.24
USP28-214ENST00000545540 FAM25EA8MYX2 175 aa13.56□□□□□ -0.24
USP28-214ENST00000545540 INSM1Q01101 510 aaPredicted RBP13.56□□□□□ -0.24
USP28-214ENST00000545540 RNF144BQ7Z419 303 aa13.56□□□□□ -0.24
USP28-214ENST00000545540 C4orf45Q96LM5 186 aa13.56□□□□□ -0.24
USP28-214ENST00000545540 TBL1XR1Q9BZK7 514 aa13.56□□□□□ -0.24
USP28-214ENST00000545540 TMEM185BQ9H7F4 350 aa13.56□□□□□ -0.24
USP28-214ENST00000545540 SDHAF2Q9NX18 166 aa13.56□□□□□ -0.24
USP28-214ENST00000545540 AKAP7Q9P0M2 348 aaPredicted RBP13.56□□□□□ -0.24
USP28-214ENST00000545540 MRPS18BQ9Y676 258 aaKnown RBP13.56□□□□□ -0.24
USP28-214ENST00000545540 MFSD13AQ14CX5 517 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 ZBTB44Q8NCP5 570 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 OR1J4Q8NGS1 313 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 MRPL48Q96GC5 212 aaKnown RBP13.55□□□□□ -0.24
USP28-214ENST00000545540 S1PR5Q9H228 398 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 POFUT1Q9H488 388 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 MED29Q9NX70 200 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 ATG2AQ2TAZ0 1938 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 SHOXO15266 292 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 XRCC3O43542 346 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 NSA2O95478 260 aaKnown RBP13.55□□□□□ -0.24
USP28-214ENST00000545540 RAB40ALP0C0E4 278 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 EIF2B1Q14232 305 aaKnown RBP13.55□□□□□ -0.24
USP28-214ENST00000545540 MANEAQ5SRI9 462 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 GVQW1Q8N7I0 195 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 RAB40AQ8WXH6 277 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 TRAF4Q9BUZ4 470 aaPredicted RBP13.55□□□□□ -0.24
USP28-214ENST00000545540 NPTNQ9Y639 398 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 H3BML4 177 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 H7C417 338 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 PNMTP11086 282 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 OR1D5P58170 312 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 SEC61A1P61619 476 aaKnown RBP13.55□□□□□ -0.24
USP28-214ENST00000545540 OR52W1Q6IF63 320 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 TMUB2Q71RG4 321 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 OTOSQ8NHW6 89 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 ZNF417Q8TAU3 575 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 ARL5BQ96KC2 179 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 ZNF587Q96SQ5 575 aaPredicted RBP13.55□□□□□ -0.24
USP28-214ENST00000545540 TTYH1Q9H313 450 aaPredicted RBP13.55□□□□□ -0.24
USP28-214ENST00000545540 GPN1Q9HCN4 374 aaPredicted RBP13.55□□□□□ -0.24
USP28-214ENST00000545540 MTFP1Q9UDX5 166 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 OPN4Q9UHM6 478 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 MKL2Q9ULH7 1088 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 FAM186AA6NE01 2351 aa13.55□□□□□ -0.24
USP28-214ENST00000545540 IGKV1D-43A0A0B4J1Z2 117 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 UBE2QL1A1L167 161 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 PRSS3P35030 304 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 MNDAP41218 407 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 EEF1A1P5Q5VTE0 462 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 SEZ6L2Q6UXD5 910 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 BAIAP2L2Q6UXY1 529 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 DCBLD2Q96PD2 775 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 SYNDIG1Q9H7V2 258 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 PLEKHA1Q9HB21 404 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 TRBV5-5A0A0J9YX44 114 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 AMY2AP04746 511 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 CALCBP10092 127 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 RAG2P55895 527 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 FNDC7Q5VTL7 733 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 IDO2Q6ZQW0 420 aa13.54□□□□□ -0.24
USP28-214ENST00000545540 C9orf40Q8IXQ3 194 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms