RNA–Protein interactions for RNA: ENST00000543545.5

CPSF7-221, Transcript of cleavage and polyadenylation specific factor 7, human

TSL 5

Gene CPSF7, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CPSF7-221	ENST00000543545	SLC22A24	Q8N4F4	322 aa		8.92	□□□□□ -0.98
CPSF7-221	ENST00000543545	OR10H5	Q8NGA6	315 aa		8.92	□□□□□ -0.98
CPSF7-221	ENST00000543545	OR52N5	Q8NH56	324 aa		8.92	□□□□□ -0.98
CPSF7-221	ENST00000543545	TRUB1	Q8WWH5	349 aa	Known RBP	8.92	□□□□□ -0.98
CPSF7-221	ENST00000543545	HTRA1	Q92743	480 aa		8.92	□□□□□ -0.98
CPSF7-221	ENST00000543545	BCL2L2	Q92843	193 aa	Predicted RBP	8.92	□□□□□ -0.98
CPSF7-221	ENST00000543545	PTP4A1	Q93096	173 aa		8.92	□□□□□ -0.98
CPSF7-221	ENST00000543545	S100PBP	Q96BU1	408 aa		8.92	□□□□□ -0.98
CPSF7-221	ENST00000543545	MUCL1	Q96DR8	90 aa		8.92	□□□□□ -0.98
CPSF7-221	ENST00000543545	ZC3HAV1L	Q96H79	300 aa	Known RBP	8.92	□□□□□ -0.98
CPSF7-221	ENST00000543545	DDO	Q99489	341 aa		8.92	□□□□□ -0.98
CPSF7-221	ENST00000543545	MED18	Q9BUE0	208 aa		8.92	□□□□□ -0.98
CPSF7-221	ENST00000543545	CDADC1	Q9BWV3	514 aa		8.92	□□□□□ -0.98
CPSF7-221	ENST00000543545	ACTR6	Q9GZN1	396 aa		8.92	□□□□□ -0.98
CPSF7-221	ENST00000543545	RNF121	Q9H920	327 aa		8.92	□□□□□ -0.98
CPSF7-221	ENST00000543545	HINT3	Q9NQE9	182 aa	Known RBP	8.92	□□□□□ -0.98
CPSF7-221	ENST00000543545	TMEM38B	Q9NVV0	291 aa		8.92	□□□□□ -0.98
CPSF7-221	ENST00000543545	NDRG3	Q9UGV2	375 aa		8.92	□□□□□ -0.98
CPSF7-221	ENST00000543545	DIDO1	Q9BTC0	2240 aa	Known RBP	8.92	□□□□□ -0.98
CPSF7-221	ENST00000543545	MPDZ	O75970	2070 aa		8.92	□□□□□ -0.98
CPSF7-221	ENST00000543545	IGLV1-36	A0A0B4J1U3	117 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545		A0A1W2PR80	420 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	SH3D21	A4FU49	640 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	TVP23A	A6NH52	213 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	TUBAL3	A6NHL2	446 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	CASK	O14936	926 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	MPZL2	O60487	215 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	MPZL1	O95297	269 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	CLIC3	O95833	236 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	GPANK1	O95872	356 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	ZNF823	P16415	610 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	MSR1	P21757	451 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	GSTT1	P30711	240 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	FMO3	P31513	532 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	ZNF133	P52736	654 aa	Predicted RBP	8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	BLVRA	P53004	296 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	MRPS34	P82930	218 aa	Known RBP	8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	APOF	Q13790	326 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	TBRG1	Q3YBR2	411 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	OTP	Q5XKR4	325 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	SLC16A14	Q7RTX9	510 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	BCDIN3D	Q7Z5W3	292 aa	Known RBP	8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	ZBTB46	Q86UZ6	589 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	LRRC18	Q8N456	261 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	SETD9	Q8NE22	299 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	C1orf162	Q8NEQ5	155 aa	Predicted RBP	8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	BBS1	Q8NFJ9	593 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	LINC01560	Q8TB33	94 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	C11orf40	Q8WZ69	217 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	TFAP2C	Q92754	450 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	MUS81	Q96NY9	551 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	PITX2	Q99697	317 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	SH3GL3	Q99963	347 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	USB1	Q9BQ65	265 aa	Known RBP	8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	HCAR1	Q9BXC0	346 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	C1QTNF6	Q9BXI9	259 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	NMNAT2	Q9BZQ4	307 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	RACGAP1	Q9H0H5	632 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	SIAE	Q9HAT2	523 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	EMC7	Q9NPA0	242 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	CCNB1IP1	Q9NPC3	277 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	POLE4	Q9NR33	117 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	CLN6	Q9NWW5	311 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	ZNF226	Q9NYT6	803 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	DNAJC27	Q9NZQ0	273 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	MOK	Q9UQ07	419 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	UGT2A1	Q9Y4X1	527 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	KLF2	Q9Y5W3	355 aa	Predicted RBP	8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	PCNX1	Q96RV3	2341 aa		8.91	□□□□□ -0.98
CPSF7-221	ENST00000543545	OR5H1	A6NKK0	313 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	SNTN	A6NMZ2	147 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	C12orf71	A8MTZ7	269 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	GLCE	O94923	617 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	WNT11	O96014	354 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	HLA-H	P01893	362 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	HOXB1	P14653	301 aa	Predicted RBP	8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	PPP3CB	P16298	524 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	ATP6V1E1	P36543	226 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	KIR2DL3	P43628	341 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	CDH11	P55287	796 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	SNRPG	P62308	76 aa	Known RBP	8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	TUBA1B	P68363	451 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	TUBA4A	P68366	448 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	ADARB1	P78563	741 aa	Known RBP	8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	SORD	Q00796	357 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	TEK	Q02763	1124 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	HSF2	Q03933	536 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	PIGF	Q07326	219 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	TFF3	Q07654	80 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	IL18R1	Q13478	541 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	SLC36A2	Q495M3	483 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	TIMM23B	Q5SRD1	257 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	LCN1P1	Q5VSP4	162 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	NXNL2	Q5VZ03	156 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	B3GLCT	Q6Y288	498 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	TUBA1A	Q71U36	451 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	MEPCE	Q7L2J0	689 aa	Known RBP	8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	P2RY8	Q86VZ1	359 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	WFDC8	Q8IUA0	241 aa		8.9	□□□□□ -0.98
CPSF7-221	ENST00000543545	GID4	Q8IVV7	300 aa		8.9	□□□□□ -0.98

Retrieved 100 of 20,778 RNA–protein pairs in 33 ms