RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	PTGS2	P35354	604 aa		11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	MECP2	P51608	486 aa	Known RBP	11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	EFNB2	P52799	333 aa		11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	SEC61A1	P61619	476 aa	Known RBP	11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	GUCA2A	Q02747	115 aa		11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	SKP2	Q13309	424 aa		11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	HLX	Q14774	488 aa	Predicted RBP	11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	TOMM34	Q15785	309 aa	Predicted RBP	11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	ZNF74	Q16587	644 aa		11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	KCTD20	Q7Z5Y7	419 aa		11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	SLC51B	Q86UW2	128 aa		11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	SPEM1	Q8N4L4	309 aa		11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	ZNF676	Q8N7Q3	588 aa		11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	OR6N2	Q8NGY6	317 aa		11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	THAP3	Q8WTV1	239 aa	Predicted RBP	11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	ZNF578	Q96N58	590 aa	Predicted RBP	11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	ELF4	Q99607	663 aa	Predicted RBP	11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	SLC7A5P2	Q9GIP4	190 aa		11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	KCNK15	Q9H427	330 aa		11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	FGF21	Q9NSA1	209 aa		11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	ING1	Q9UK53	422 aa	Predicted RBP	11.31	□□□□□ -0.6
RNF4-222	ENST00000541204	MFSD2B	A6NFX1	497 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	TUBAL3	A6NHL2	446 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	ZNF264	O43296	627 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	TMEM127	O75204	238 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	HIST1H2AB	P04908	130 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	GUSB	P08236	651 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	CD14	P08571	375 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	IL12B	P29460	328 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	SDHA	P31040	664 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	S100A11	P31949	105 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	MNDA	P41218	407 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	PPIC	P45877	212 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	STARD6	P59095	220 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	RBMS2	Q15434	407 aa	Known RBP	11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	HLA-DQA1	Q5Y7H0	255 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	HIST3H2A	Q7L7L0	130 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	SLC36A1	Q7Z2H8	476 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	DPY19L4	Q7Z388	723 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	CDC20B	Q86Y33	519 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	C9orf40	Q8IXQ3	194 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	ZNF721	Q8TF20	911 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	HIST1H2AC	Q93077	130 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	KTI12	Q96EK9	354 aa	Predicted RBP	11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	NKX3-1	Q99801	234 aa	Predicted RBP	11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	TMPRSS13	Q9BYE2	586 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	WDR76	Q9H967	626 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	OPN4	Q9UHM6	478 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	HIF3A	Q9Y2N7	669 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	FXYD6-FXYD2	A0A087WZ82	144 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204		H7C417	338 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	XRCC3	O43542	346 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	NUDT21	O43809	227 aa	Known RBP	11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	AKR7A3	O95154	331 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	IL33	O95760	270 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	NMB	P08949	121 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	ZNF35	P13682	527 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	ATF4	P18848	351 aa	Predicted RBP	11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	TACR3	P29371	465 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	CXCL12	P48061	93 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	TUSC1	Q2TAM9	212 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	WBP2NL	Q6ICG8	309 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	RGS7BP	Q6MZT1	257 aa	Predicted RBP	11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	LRRN1	Q6UXK5	716 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	DNM1P46	Q6ZS02	220 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	TMUB2	Q71RG4	321 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	TMPRSS9	Q7Z410	1059 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	ZNF227	Q86WZ6	799 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	LRRC75A	Q8NAA5	344 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	OR51D1	Q8NGF3	324 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	OR2G2	Q8NGZ5	317 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	PNPLA2	Q96AD5	504 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	SHD	Q96IW2	340 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	SLC46A1	Q96NT5	459 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	FXYD6	Q9H0Q3	95 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	PPA2	Q9H2U2	334 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	GRHPR	Q9UBQ7	328 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	MTFP1	Q9UDX5	166 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	STEAP1	Q9UHE8	339 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	MOK	Q9UQ07	419 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	PRELID1	Q9Y255	219 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	CACNA1C	Q13936	2221 aa		11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	ARID1B	Q8NFD5	2236 aa	Predicted RBP	11.3	□□□□□ -0.6
RNF4-222	ENST00000541204	UBE2QL1	A1L167	161 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	OR6C65	A6NJZ3	312 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	OR4C45	A6NMZ5	311 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	GOSR2	O14653	212 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	FBXO45	P0C2W1	286 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	GLB1	P16278	677 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	ZP3	P21754	424 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	SLC25A1	P53007	311 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	DLX5	P56178	289 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	EGR4	Q05215	589 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	C1QL3	Q5VWW1	255 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	LRRC69	Q6ZNQ3	347 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	SDR16C5	Q8N3Y7	309 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	C15orf40	Q8WUR7	153 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	KLHL15	Q96M94	604 aa		11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	PELO	Q9BRX2	385 aa	Known RBP	11.29	□□□□□ -0.6
RNF4-222	ENST00000541204	SLC19A3	Q9BZV2	496 aa		11.29	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 96.5 ms