RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 CNOT4O95628 575 aaKnown RBP10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 ZNF28P17035 718 aa10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 AKR1C4P17516 323 aa10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 BACE1P56817 501 aa10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 RPS11P62280 158 aaKnown RBP eCLIP10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 SIRPAP78324 504 aa10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 PPP1R1AQ13522 171 aa10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 MIDNQ504T8 468 aa10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 DNLZQ5SXM8 178 aa10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 BIVMQ86UB2 503 aa10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 GKN2Q86XP6 184 aa10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 MFSD8Q8NHS3 518 aa10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 MOAP1Q96BY2 351 aa10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 PELI1Q96FA3 418 aa10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 ZNF587Q96SQ5 575 aaPredicted RBP10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 SLC12A9Q9BXP2 914 aa10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 KCNK15Q9H427 330 aa10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 CWH43Q9H720 699 aa10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 ZMAT3Q9HA38 289 aaKnown RBP10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 A4GALTQ9NPC4 353 aa10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 IL26Q9NPH9 171 aa10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 SLC2A4RGQ9NR83 387 aa10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 SEMA5BQ9P283 1151 aa10.96□□□□□ -0.65
LIMCH1-213ENST00000511496 PRAMEF27A3QJZ7 478 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 CASTOR2A6NHX0 329 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 CBY3A6NI87 242 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 NFKBIEO00221 500 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 HOXA2O43364 376 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 PAPLNO95428 1278 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 GPANK1O95872 356 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 EPPINO95925 133 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 CRYABP02511 175 aaKnown RBP10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 F3P13726 295 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 MDKP21741 143 aaPredicted RBP10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 SLC7A9P82251 487 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 CDK5R1Q15078 307 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 EIF5AL1Q6IS14 154 aaKnown RBP10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 BTNL3Q6UXE8 466 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 ZNF683Q8IZ20 524 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 MAML2Q8IZL2 1156 aaPredicted RBP10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 C15orf40Q8WUR7 153 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 SUSD6Q92537 303 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 SLC25A31Q9H0C2 315 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 NELFAQ9H3P2 528 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 SAGE1Q9NXZ1 904 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 FLVCR1Q9Y5Y0 555 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 ZNF646O15015 1829 aaPredicted RBP10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 GAPDHSO14556 408 aaPredicted RBP10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 METTL15P1P0C7V9 234 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 CKBP12277 381 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 PPP2R1BP30154 601 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 IGFALSP35858 605 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 EFNB2P52799 333 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 GAGE1Q13065 139 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 TMEM205Q6UW68 189 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 WDR88Q6ZMY6 472 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 MBOAT2Q6ZWT7 520 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 HS6ST3Q8IZP7 471 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 KDM8Q8N371 416 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 Q8NFD4 153 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 OR4C6Q8NH72 309 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 ZNF461Q8TAF7 563 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 TMEM255BQ8WV15 326 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 HPSE2Q8WWQ2 592 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 ZMYND19Q96E35 227 aaPredicted RBP10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 MRGPRX4Q96LA9 322 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 SEPT5Q99719 369 aaPredicted RBP10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 FAAP24Q9BTP7 215 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 C1orf198Q9H425 327 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 TAAR2Q9P1P5 351 aa10.96□□□□□ -0.66
LIMCH1-213ENST00000511496 CHD3Q12873 2000 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 A0A087WV48 116 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 SCGNO76038 276 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 FBXO45P0C2W1 286 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 GIMD1P0DJR0 217 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 RAB1AP62820 205 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 HERPUD1Q15011 391 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 UBE3DQ7Z6J8 389 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 PEG10Q86TG7 708 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 ZNF283Q8N7M2 679 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 OR51D1Q8NGF3 324 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 ABHD5Q8WTS1 349 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 EDAQ92838 391 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 DPH1Q9BZG8 443 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 SMIM3Q9BZL3 60 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 CSNK1G1Q9HCP0 422 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 PADI1Q9ULC6 663 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 GPR55Q9Y2T6 319 aaPredicted RBP10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 TVP23AA6NH52 213 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 CDRT15L2A8MXV6 281 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 H0YIZ8 118 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 B4GALT2O60909 372 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 CLDN7O95471 211 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 IGSF6O95976 241 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 OR4A8P0C604 315 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 CSF2RAP15509 400 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 ACRV1P26436 265 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 PCSK1P29120 753 aa10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 TAGLN2P37802 199 aaKnown RBP10.95□□□□□ -0.66
LIMCH1-213ENST00000511496 YBEYP58557 167 aaPredicted RBP10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms