RNA–Protein interactions for RNA: ENST00000498473.6

MSH5-SAPCD1-208, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 1 (best)

Gene MSH5-SAPCD1, Length 2,216 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-208ENST00000498473 CXCL2P19875 107 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 EFNB2P52799 333 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 GFERP55789 205 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ODF4Q2M2E3 257 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 C1QL3Q5VWW1 255 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 OTPQ5XKR4 325 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 TMEM65Q6PI78 240 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ZNF600Q6ZNG1 722 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 PM20D2Q8IYS1 436 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 PRR22Q8IZ63 422 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ZNF676Q8N7Q3 588 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 OR8K3Q8NH51 312 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ZNF563Q8TA94 476 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ZNF417Q8TAU3 575 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 GPR148Q8TDV2 347 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 C15orf40Q8WUR7 153 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ATOH1Q92858 354 aaPredicted RBP14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 KLHDC7BQ96G42 594 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 C4orf45Q96LM5 186 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 INTS14Q96SY0 518 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 SEMA4CQ9C0C4 833 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 LAT2Q9GZY6 243 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 PPA2Q9H2U2 334 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ZNF69Q9UC07 566 aa14.53□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 TMEM212A6NML5 194 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 H0YIG0 161 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ICOSLGO75144 302 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 OR2A4O95047 310 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 GIPP09681 153 aaPredicted RBP14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 VSIG10L2P0DP72 767 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 FASLGP48023 281 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 BLKP51451 505 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 SCAND1P57086 179 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ZNF117Q03924 483 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 TOMM34Q15785 309 aaPredicted RBP14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 WDR38Q5JTN6 314 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 PRSS42Q7Z5A4 293 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 MARC2Q969Z3 335 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ADIPOR1Q96A54 375 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 DNAJA3Q96EY1 480 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 SLC46A1Q96NT5 459 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 DCBLD2Q96PD2 775 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 OR2A7Q96R45 310 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 ADOQ96SZ5 270 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 COMMD4Q9H0A8 199 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 FSCN3Q9NQT6 498 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 KCNG2Q9UJ96 466 aa14.52□□□□□ -0.08
MSH5-SAPCD1-208ENST00000498473 A0A1W2PPC4 97 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 FITM1A5D6W6 292 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 SNRPGP15A8MWD9 76 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 H7C417 338 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 PYCARD-AS1I3L0S3 204 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 M0R233 179 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 TSPAN4O14817 238 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 GMFGO60234 142 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 ZNF250P15622 560 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 HAAOP46952 286 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 KCNAB1Q14722 419 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 OPCMLQ14982 345 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 SLC36A1Q7Z2H8 476 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 COMMD7Q86VX2 200 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 ZNF227Q86WZ6 799 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 LILRB2Q8N423 598 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 MTFP1Q9UDX5 166 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 PPIEQ9UNP9 301 aaKnown RBP14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 RIF1Q5UIP0 2472 aaKnown RBP14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 ADAMTS9Q9P2N4 1935 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 FRG2CA6NGY1 282 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 CREBL2O60519 120 aaPredicted RBP14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 IGKV3-11P04433 115 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 HIST1H2ABP04908 130 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 CFPP27918 469 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 AVPR2P30518 371 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 PSMA6P60900 246 aaKnown RBP14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 RIPPLY1Q0D2K3 151 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 FDX2Q6P4F2 183 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 ANKRD16Q6P6B7 361 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 HIST3H2AQ7L7L0 130 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 TMEM151BQ8IW70 566 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 MEIOBQ8N635 442 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 OR51D1Q8NGF3 324 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 OR52B4Q8NGK2 314 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 OTOSQ8NHW6 89 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 ZNF721Q8TF20 911 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 HIST1H2ACQ93077 130 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 TSLPQ969D9 159 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 OR8D2Q9GZM6 311 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 TMEM14AQ9Y6G1 99 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 CACNA1CQ13936 2221 aa14.51□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 CTAG2O75638 210 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 DDAH2O95865 285 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 HRGP04196 525 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 RORAP35398 523 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 EFNA3P52797 238 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 GPR85P60893 370 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 RASGEF1BQ0VAM2 473 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 BIKQ13323 160 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 ASPHD2Q6ICH7 369 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 OR5M10Q6IEU7 315 aa14.5□□□□□ -0.09
MSH5-SAPCD1-208ENST00000498473 NHLRC1Q6VVB1 395 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms