RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 GLULP15104 373 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 AKR1C2P52895 323 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 AKR1C1Q04828 323 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 EBPQ15125 230 aaKnown RBP14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 SMAD2Q15796 467 aaKnown RBP14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 TEX19Q8NA77 164 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 OR5AK2Q8NH90 309 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 TSEN15Q8WW01 171 aaKnown RBP14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 ZNF578Q96N58 590 aaPredicted RBP14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 DPYSL5Q9BPU6 564 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 OR11A1Q9GZK7 315 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 ZC4H2Q9NQZ6 224 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 GUSBP08236 651 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 ACHEP22303 614 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 ART1P52961 327 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 TDGQ13569 410 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 ETFDHQ16134 617 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 ARHGAP40Q5TG30 622 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 TDHQ8IZJ6 230 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 EXD3Q8N9H8 876 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 ST8SIA2Q92186 375 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 HGDQ93099 445 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 SEC22AQ96IW7 307 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 EVA1AQ9H8M9 152 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 COPZ2Q9P299 210 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 NUP50Q9UKX7 468 aa14.92□□□□□ -0.02
CCDC88B-210ENST00000494566 FITM1A5D6W6 292 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 GABARAPH6UMI1 98 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 SOX1O00570 391 aaPredicted RBP14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 SUSD5O60279 629 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 UPK3AO75631 287 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 TSPAN9O75954 239 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 CXCR1P25024 350 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 CCKBRP32239 447 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 HNRNPKP61978 463 aaKnown RBP eCLIP14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 PLCXD2Q0VAA5 305 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 MEP1BQ16820 701 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 SLC35D3Q5M8T2 416 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 COL13A1Q5TAT6 717 aaPredicted RBP14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 METTL11BQ5VVY1 283 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 ZNF440Q8IYI8 595 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 MUC20Q8N307 709 aaPredicted RBP14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 NSMAFQ92636 917 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 KCNG2Q9UJ96 466 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 LAMP5Q9UJQ1 280 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 FBXL3Q9UKT7 428 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 IGHV1OR21-1A0A087WYE8 117 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 hCG_1807616A0A1W2PRN6 198 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 NUP62P37198 522 aaPredicted RBP14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 NKPD1Q17RQ9 610 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 ZNF684Q5T5D7 378 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 HLA-DQA1Q5Y7H0 255 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 GLDNQ6ZMI3 551 aaPredicted RBP14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 ZNF627Q7L945 461 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 PRSS42Q7Z5A4 293 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 BIVMQ86UB2 503 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 SLC35F3Q8IY50 421 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 ST8SIA4Q92187 359 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 WNT2BQ93097 391 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 CYYR1Q96J86 154 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 GPX7Q96SL4 187 aaPredicted RBP14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 NUDT22Q9BRQ3 303 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 TBL1XR1Q9BZK7 514 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 SLC19A3Q9BZV2 496 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 ATXN7L1Q9ULK2 861 aaPredicted RBP14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 KCNMB2Q9Y691 235 aa14.91□□□□□ -0.02
CCDC88B-210ENST00000494566 IGKV3D-11A0A0A0MRZ8 115 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 BLACEA4D250 179 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 CD3DP04234 171 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 HIST1H2ABP04908 130 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 NAT1P18440 290 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 FBLP22087 321 aaKnown RBP14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 HSD11B2P80365 405 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 HLXQ14774 488 aaPredicted RBP14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 CSRP2Q16527 193 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 ELP2Q6IA86 826 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 HIST3H2AQ7L7L0 130 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 SLC16A9Q7RTY1 509 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 HIST1H2ACQ93077 130 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 DIABLOQ9NR28 239 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 CGGBP1Q9UFW8 167 aaPredicted RBP14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 FRG2CA6NGY1 282 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 FAM25EA8MYX2 175 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 MCRIP1C9JLW8 97 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 PIAS2O75928 621 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 IL11P20809 199 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 ABCD3P28288 659 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 NXPH1P58417 271 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 SCGB2B2Q4G0G5 96 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 UNQ9370/PRO34162Q6UXP9 181 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 OVCH1Q7RTY7 1134 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 FAM220AQ7Z4H9 259 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 C17orf82Q86X59 251 aaPredicted RBP14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 SLC43A2Q8N370 569 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 FBXW5Q969U6 566 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 VN1R1Q9GZP7 353 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 ZNF304Q9HCX3 659 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 GPR160Q9UJ42 338 aa14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 CDV3Q9UKY7 258 aaKnown RBP14.9□□□□□ -0.02
CCDC88B-210ENST00000494566 CEP192Q8TEP8 1941 aa14.9□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms