RNA–Protein interactions for RNA: ENST00000492980.1

CCDC88B-208, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 5

Gene CCDC88B, Length 2,118 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-208ENST00000492980 ST6GAL2Q96JF0 529 aa18.91■□□□□ 0.62
CCDC88B-208ENST00000492980 LIN7BQ9HAP6 207 aa18.91■□□□□ 0.62
CCDC88B-208ENST00000492980 TP53I11O14683 189 aa18.9■□□□□ 0.62
CCDC88B-208ENST00000492980 PNPP00491 289 aa18.9■□□□□ 0.62
CCDC88B-208ENST00000492980 GP1BAP07359 652 aa18.9■□□□□ 0.62
CCDC88B-208ENST00000492980 FREM3P0C091 2139 aa18.9■□□□□ 0.62
CCDC88B-208ENST00000492980 DDOSTP39656 456 aa18.9■□□□□ 0.62
CCDC88B-208ENST00000492980 AGFG1P52594 562 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-208ENST00000492980 SLC36A2Q495M3 483 aa18.9■□□□□ 0.62
CCDC88B-208ENST00000492980 PRAMEF20Q5VT98 475 aa18.9■□□□□ 0.62
CCDC88B-208ENST00000492980 TCEAL6Q6IPX3 200 aa18.9■□□□□ 0.62
CCDC88B-208ENST00000492980 C3orf33Q6P1S2 294 aa18.9■□□□□ 0.62
CCDC88B-208ENST00000492980 KRT77Q7Z794 578 aa18.9■□□□□ 0.62
CCDC88B-208ENST00000492980 TCEAL3Q969E4 200 aa18.9■□□□□ 0.62
CCDC88B-208ENST00000492980 TMEM106AQ96A25 262 aa18.9■□□□□ 0.62
CCDC88B-208ENST00000492980 SLC25A38Q96DW6 304 aa18.9■□□□□ 0.62
CCDC88B-208ENST00000492980 ZFP3Q96NJ6 502 aa18.9■□□□□ 0.62
CCDC88B-208ENST00000492980 MARVELD1Q9BSK0 173 aa18.9■□□□□ 0.62
CCDC88B-208ENST00000492980 B3GAT1Q9P2W7 334 aa18.9■□□□□ 0.62
CCDC88B-208ENST00000492980 POU2F3Q9UKI9 436 aa18.9■□□□□ 0.62
CCDC88B-208ENST00000492980 MRPS7Q9Y2R9 242 aaKnown RBP18.9■□□□□ 0.62
CCDC88B-208ENST00000492980 TRAV8-7A0A075B6U6 113 aa18.89■□□□□ 0.62
CCDC88B-208ENST00000492980 IGKV1D-43A0A0B4J1Z2 117 aa18.89■□□□□ 0.62
CCDC88B-208ENST00000492980 TRABD2BA6NFA1 517 aa18.89■□□□□ 0.62
CCDC88B-208ENST00000492980 ACP1P24666 158 aa18.89■□□□□ 0.62
CCDC88B-208ENST00000492980 NKX2-5P52952 324 aaPredicted RBP18.89■□□□□ 0.62
CCDC88B-208ENST00000492980 CLDN12P56749 244 aa18.89■□□□□ 0.62
CCDC88B-208ENST00000492980 DGCR2P98153 550 aa18.89■□□□□ 0.62
CCDC88B-208ENST00000492980 TATDN3Q17R31 274 aa18.89■□□□□ 0.62
CCDC88B-208ENST00000492980 TBRG1Q3YBR2 411 aa18.89■□□□□ 0.62
CCDC88B-208ENST00000492980 NHLRC1Q6VVB1 395 aa18.89■□□□□ 0.62
CCDC88B-208ENST00000492980 OR4K17Q8NGC6 315 aa18.89■□□□□ 0.62
CCDC88B-208ENST00000492980 OR52N5Q8NH56 324 aa18.89■□□□□ 0.62
CCDC88B-208ENST00000492980 M1APQ8TC57 530 aa18.89■□□□□ 0.62
CCDC88B-208ENST00000492980 SLC7A6Q92536 515 aa18.89■□□□□ 0.62
CCDC88B-208ENST00000492980 ABCG5Q9H222 651 aa18.89■□□□□ 0.62
CCDC88B-208ENST00000492980 TMEM185BQ9H7F4 350 aa18.89■□□□□ 0.62
CCDC88B-208ENST00000492980 CACNG2Q9Y698 323 aa18.89■□□□□ 0.62
CCDC88B-208ENST00000492980 KIF26BQ2KJY2 2108 aa18.89■□□□□ 0.61
CCDC88B-208ENST00000492980 FAM47E-STBD1D6RA91 191 aa18.89■□□□□ 0.61
CCDC88B-208ENST00000492980 H3BSH0 61 aa18.89■□□□□ 0.61
CCDC88B-208ENST00000492980 CD3GP09693 182 aa18.89■□□□□ 0.61
CCDC88B-208ENST00000492980 SLC6A1P30531 599 aa18.89■□□□□ 0.61
CCDC88B-208ENST00000492980 SRP9P49458 86 aaKnown RBP18.89■□□□□ 0.61
CCDC88B-208ENST00000492980 MFGE8Q08431 387 aaPredicted RBP18.89■□□□□ 0.61
CCDC88B-208ENST00000492980 SNTA1Q13424 505 aa18.89■□□□□ 0.61
CCDC88B-208ENST00000492980 OR7E24Q6IFN5 339 aa18.89■□□□□ 0.61
CCDC88B-208ENST00000492980 FCRLAQ7L513 359 aa18.89■□□□□ 0.61
CCDC88B-208ENST00000492980 MDGA2Q7Z553 956 aa18.89■□□□□ 0.61
CCDC88B-208ENST00000492980 IZUMO1Q8IYV9 350 aa18.89■□□□□ 0.61
CCDC88B-208ENST00000492980 UBASH3BQ8TF42 649 aa18.89■□□□□ 0.61
CCDC88B-208ENST00000492980 MCHR2Q969V1 340 aa18.89■□□□□ 0.61
CCDC88B-208ENST00000492980 SLC22A13Q9Y226 551 aa18.89■□□□□ 0.61
CCDC88B-208ENST00000492980 LRP12Q9Y561 859 aa18.89■□□□□ 0.61
CCDC88B-208ENST00000492980 A8MV72 311 aaPredicted RBP18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 OPN1LWP04000 364 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 HLA-DMAP28067 261 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 BTCP35070 178 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 RIDAP52758 137 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 BIDP55957 195 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 RNASE12Q5GAN4 147 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 STPG1Q5TH74 334 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 ADPRHL1Q8NDY3 354 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 DNAAF1Q8NEP3 725 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 CMKLR1Q99788 373 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 MRI1Q9BV20 369 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 KLHL13Q9P2N7 655 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 OR5V1Q9UGF6 321 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 NUFIP1Q9UHK0 495 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 PAIP2BQ9ULR5 123 aaKnown RBP18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 RPH3AQ9Y2J0 694 aaPredicted RBP18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 FRYLO94915 3013 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 EML6Q6ZMW3 1958 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 B4E171 279 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 CTDSPLO15194 276 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 GSTZ1O43708 216 aaPredicted RBP18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 CALCBP10092 127 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 ZNF823P16415 610 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 TSPAN7P41732 249 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 PCK2Q16822 640 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 PLA1AQ53H76 456 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 OPN5Q6U736 354 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 KRT74Q7RTS7 529 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 OR11G2Q8NGC1 345 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 EMC6Q9BV81 110 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 ALG5Q9Y673 324 aa18.88■□□□□ 0.61
CCDC88B-208ENST00000492980 KHDRBS3O75525 346 aaKnown RBP18.87■□□□□ 0.61
CCDC88B-208ENST00000492980 MAS1P04201 325 aa18.87■□□□□ 0.61
CCDC88B-208ENST00000492980 P2RY4P51582 365 aa18.87■□□□□ 0.61
CCDC88B-208ENST00000492980 TMEM81Q6P7N7 255 aa18.87■□□□□ 0.61
CCDC88B-208ENST00000492980 CATSPERDQ86XM0 798 aa18.87■□□□□ 0.61
CCDC88B-208ENST00000492980 TSEN15Q8WW01 171 aaKnown RBP18.87■□□□□ 0.61
CCDC88B-208ENST00000492980 PPP1R14AQ96A00 147 aa18.87■□□□□ 0.61
CCDC88B-208ENST00000492980 CREB3L1Q96BA8 519 aa18.87■□□□□ 0.61
CCDC88B-208ENST00000492980 PTGES2Q9H7Z7 377 aa18.87■□□□□ 0.61
CCDC88B-208ENST00000492980 RABL2AQ9UBK7 228 aaPredicted RBP18.87■□□□□ 0.61
CCDC88B-208ENST00000492980 RABL2BQ9UNT1 228 aa18.87■□□□□ 0.61
CCDC88B-208ENST00000492980 MUC3AQ02505 3323 aa18.87■□□□□ 0.61
CCDC88B-208ENST00000492980 A0A1W2PNR3 127 aa18.86■□□□□ 0.61
CCDC88B-208ENST00000492980 ORC5O43913 435 aa18.86■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms