RNA–Protein interactions for RNA: ENST00000491659.5

USP39-217, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 648 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-217ENST00000491659 NMD3Q96D46 503 aaKnown RBP13.02□□□□□ -0.33
USP39-217ENST00000491659 FAM46AQ96IP4 442 aaKnown RBP13.02□□□□□ -0.33
USP39-217ENST00000491659 NSMCE2Q96MF7 247 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 DOK1Q99704 481 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 LRMDAQ9H2I8 198 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 SIAEQ9HAT2 523 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 NDUFAF4Q9P032 175 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 ZANQ9Y493 2812 aa13.02□□□□□ -0.33
USP39-217ENST00000491659 SLC22A23A1A5C7 686 aa13.01□□□□□ -0.33
USP39-217ENST00000491659 CDC42EP2O14613 210 aa13.01□□□□□ -0.33
USP39-217ENST00000491659 ARPC2O15144 300 aa13.01□□□□□ -0.33
USP39-217ENST00000491659 CD5LO43866 347 aa13.01□□□□□ -0.33
USP39-217ENST00000491659 CDAP32320 146 aa13.01□□□□□ -0.33
USP39-217ENST00000491659 GUCA1AP43080 201 aaPredicted RBP13.01□□□□□ -0.33
USP39-217ENST00000491659 MNAT1P51948 309 aa13.01□□□□□ -0.33
USP39-217ENST00000491659 VLDLRP98155 873 aa13.01□□□□□ -0.33
USP39-217ENST00000491659 LOXL1Q08397 574 aaPredicted RBP13.01□□□□□ -0.33
USP39-217ENST00000491659 SGCAQ16586 387 aa13.01□□□□□ -0.33
USP39-217ENST00000491659 SPATS1Q496A3 300 aa13.01□□□□□ -0.33
USP39-217ENST00000491659 PODNL1Q6PEZ8 512 aa13.01□□□□□ -0.33
USP39-217ENST00000491659 SLC25A47Q6Q0C1 308 aa13.01□□□□□ -0.33
USP39-217ENST00000491659 DEFB107AQ8IZN7 70 aa13.01□□□□□ -0.33
USP39-217ENST00000491659 NEU4Q8WWR8 484 aaPredicted RBP13.01□□□□□ -0.33
USP39-217ENST00000491659 PYURFQ96I23 114 aa13.01□□□□□ -0.33
USP39-217ENST00000491659 C7orf34Q96L11 122 aa13.01□□□□□ -0.33
USP39-217ENST00000491659 CDRT15Q96T59 188 aa13.01□□□□□ -0.33
USP39-217ENST00000491659 MRPL37Q9BZE1 423 aaKnown RBP13.01□□□□□ -0.33
USP39-217ENST00000491659 GRHPRQ9UBQ7 328 aa13.01□□□□□ -0.33
USP39-217ENST00000491659 AURKCQ9UQB9 309 aa13.01□□□□□ -0.33
USP39-217ENST00000491659 UGT2A1Q9Y4X1 527 aa13.01□□□□□ -0.33
USP39-217ENST00000491659 CHD3Q12873 2000 aaKnown RBP13.01□□□□□ -0.33
USP39-217ENST00000491659 HIVEP2P31629 2446 aa13.01□□□□□ -0.33
USP39-217ENST00000491659 TLN2Q9Y4G6 2542 aa13.01□□□□□ -0.33
USP39-217ENST00000491659 A0A096LNT2 108 aa13□□□□□ -0.33
USP39-217ENST00000491659 IGKV1D-43A0A0B4J1Z2 117 aa13□□□□□ -0.33
USP39-217ENST00000491659 A0A1W2PPL8 197 aa13□□□□□ -0.33
USP39-217ENST00000491659 LOC390937A0A1W2PQ73 354 aa13□□□□□ -0.33
USP39-217ENST00000491659 SH3PXD2BA1X283 911 aa13□□□□□ -0.33
USP39-217ENST00000491659 M0R233 179 aa13□□□□□ -0.33
USP39-217ENST00000491659 XKRYO14609 159 aa13□□□□□ -0.33
USP39-217ENST00000491659 SYNGR3O43761 229 aa13□□□□□ -0.33
USP39-217ENST00000491659 TLX2O43763 284 aaPredicted RBP13□□□□□ -0.33
USP39-217ENST00000491659 DIRAS1O95057 198 aa13□□□□□ -0.33
USP39-217ENST00000491659 NDUFB2O95178 105 aa13□□□□□ -0.33
USP39-217ENST00000491659 SNAP29O95721 258 aa13□□□□□ -0.33
USP39-217ENST00000491659 CD14P08571 375 aa13□□□□□ -0.33
USP39-217ENST00000491659 APLNRP35414 380 aa13□□□□□ -0.33
USP39-217ENST00000491659 EVX1P49640 407 aa13□□□□□ -0.33
USP39-217ENST00000491659 SMIM11AP58511 58 aa13□□□□□ -0.33
USP39-217ENST00000491659 ERVK-25P63136 954 aa13□□□□□ -0.33
USP39-217ENST00000491659 SPIBQ01892 262 aa13□□□□□ -0.33
USP39-217ENST00000491659 FHL1Q13642 323 aa13□□□□□ -0.33
USP39-217ENST00000491659 RGS7BPQ6MZT1 257 aaPredicted RBP13□□□□□ -0.33
USP39-217ENST00000491659 CLDN22Q8N7P3 220 aa13□□□□□ -0.33
USP39-217ENST00000491659 ARIH2OSQ8N7S6 290 aa13□□□□□ -0.33
USP39-217ENST00000491659 NABP1Q96AH0 204 aa13□□□□□ -0.33
USP39-217ENST00000491659 RSRC1Q96IZ7 334 aaKnown RBP13□□□□□ -0.33
USP39-217ENST00000491659 ZNF570Q96NI8 536 aa13□□□□□ -0.33
USP39-217ENST00000491659 CCT8L2Q96SF2 557 aa13□□□□□ -0.33
USP39-217ENST00000491659 SYT3Q9BQG1 590 aa13□□□□□ -0.33
USP39-217ENST00000491659 CD300AQ9UGN4 299 aa13□□□□□ -0.33
USP39-217ENST00000491659 ADAM21Q9UKJ8 722 aa13□□□□□ -0.33
USP39-217ENST00000491659 FN1P02751 2386 aaKnown RBP13□□□□□ -0.33
USP39-217ENST00000491659 TRBV4-1A0A0J9YWV2 114 aa12.99□□□□□ -0.33
USP39-217ENST00000491659 A0A1W2PPW3 197 aa12.99□□□□□ -0.33
USP39-217ENST00000491659 TMEM129A0AVI4 362 aa12.99□□□□□ -0.33
USP39-217ENST00000491659 H7C1C5 153 aa12.99□□□□□ -0.33
USP39-217ENST00000491659 SEMG1P04279 462 aa12.99□□□□□ -0.33
USP39-217ENST00000491659 FABP3P05413 133 aa12.99□□□□□ -0.33
USP39-217ENST00000491659 ADRA2AP08913 450 aa12.99□□□□□ -0.33
USP39-217ENST00000491659 MMP7P09237 267 aaPredicted RBP12.99□□□□□ -0.33
USP39-217ENST00000491659 FAM157BP0CG42 384 aa12.99□□□□□ -0.33
USP39-217ENST00000491659 CCL2P13500 99 aa12.99□□□□□ -0.33
USP39-217ENST00000491659 ZNF32P17041 273 aa12.99□□□□□ -0.33
USP39-217ENST00000491659 MSX2P35548 267 aaPredicted RBP12.99□□□□□ -0.33
USP39-217ENST00000491659 LCN6P62502 163 aa12.99□□□□□ -0.33
USP39-217ENST00000491659 TMEM249Q2WGJ8 235 aa12.99□□□□□ -0.33
USP39-217ENST00000491659 PABPC1L2AQ5JQF8 200 aa12.99□□□□□ -0.33
USP39-217ENST00000491659 OR52J3Q8NH60 311 aa12.99□□□□□ -0.33
USP39-217ENST00000491659 DHRS1Q96LJ7 313 aa12.99□□□□□ -0.33
USP39-217ENST00000491659 OR51B6Q9H340 312 aa12.99□□□□□ -0.33
USP39-217ENST00000491659 MS4A5Q9H3V2 200 aa12.99□□□□□ -0.33
USP39-217ENST00000491659 FZR1Q9UM11 496 aa12.99□□□□□ -0.33
USP39-217ENST00000491659 SIGLEC7Q9Y286 467 aa12.99□□□□□ -0.33
USP39-217ENST00000491659 ADAM18Q9Y3Q7 739 aa12.99□□□□□ -0.33
USP39-217ENST00000491659 CSPG4Q6UVK1 2322 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 UNC119BA6NIH7 251 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 GADD45GO95257 159 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 LCKP06239 509 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 CST2P09228 141 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 DAOP14920 347 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 USF1P22415 310 aaPredicted RBP12.98□□□□□ -0.33
USP39-217ENST00000491659 APEX1P27695 318 aaKnown RBP12.98□□□□□ -0.33
USP39-217ENST00000491659 RAD52P43351 418 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 NR4A2P43354 598 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 OMPP47874 163 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 LIMS1P48059 325 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 SELENOVP59797 346 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 PCBD1P61457 104 aa12.98□□□□□ -0.33
USP39-217ENST00000491659 KRR1Q13601 381 aaKnown RBP12.98□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms