RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 C1orf189Q5VU69 101 aa16.18■□□□□ 0.18
VIM-206ENST00000487938 ASPHD2Q6ICH7 369 aa16.18■□□□□ 0.18
VIM-206ENST00000487938 BPHLQ86WA6 291 aaPredicted RBP16.18■□□□□ 0.18
VIM-206ENST00000487938 UTP23Q9BRU9 249 aaKnown RBP16.18■□□□□ 0.18
VIM-206ENST00000487938 MAB21L2Q9Y586 359 aa16.18■□□□□ 0.18
VIM-206ENST00000487938 TMED7-TICAM2A0A0A6YYA0 188 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 PLSCR5A0PG75 271 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 PHYHO14832 338 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 SHOXO15266 292 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 CDC40O60508 579 aaKnown RBP eCLIP16.17■□□□□ 0.18
VIM-206ENST00000487938 MPZL1O95297 269 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 WNT11O96014 354 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 IL5P05113 134 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 CTLA4P16410 223 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 OR1D5P58170 312 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 ADAM8P78325 824 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 MFGE8Q08431 387 aaPredicted RBP16.17■□□□□ 0.18
VIM-206ENST00000487938 ELAVL1Q15717 326 aaKnown RBP16.17■□□□□ 0.18
VIM-206ENST00000487938 OR7E24Q6IFN5 339 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 CHMP1BQ7LBR1 199 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 NUP54Q7Z3B4 507 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 KRT77Q7Z794 578 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 ZNF679Q8IYX0 411 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 TSTD1Q8NFU3 115 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 FAM3DQ96BQ1 224 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 OMA1Q96E52 524 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 ZDHHC12Q96GR4 267 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 CCDC120Q96HB5 630 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 SFXN2Q96NB2 322 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 ATG5Q9H1Y0 275 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 UCK1Q9HA47 277 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 TMED7Q9Y3B3 224 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 RHPN2P1A8MT19 583 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 H3BMH7 237 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 GIPP09681 153 aaPredicted RBP16.17■□□□□ 0.18
VIM-206ENST00000487938 GTF2F2P13984 249 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 PGCP20142 388 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 RAB14P61106 215 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 IKZF1Q13422 519 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 RAB11BQ15907 218 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 NDUFAF7Q7L592 441 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 SLC36A1Q7Z2H8 476 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 ADGRG3Q86Y34 549 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 OR51S1Q8NGJ8 323 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 OR5M1Q8NGP8 315 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 OIT3Q8WWZ8 545 aa16.17■□□□□ 0.18
VIM-206ENST00000487938 OR2M5A3KFT3 312 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 SNRPGP15A8MWD9 76 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 ALG1L2C9J202 215 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 L7N2F9 121 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 GLULP15104 373 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 NFYAP23511 347 aaPredicted RBP16.16■□□□□ 0.18
VIM-206ENST00000487938 ABCD3P28288 659 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 FAUP35544 74 aaKnown RBP16.16■□□□□ 0.18
VIM-206ENST00000487938 ARL4DP49703 201 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 RBMS2Q15434 407 aaKnown RBP16.16■□□□□ 0.18
VIM-206ENST00000487938 SGCBQ16585 318 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 SLC18B1Q6NT16 456 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 SHISA6Q6ZSJ9 500 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 OR1L3Q8NH93 324 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 ZNF519Q8TB69 540 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 DUSP19Q8WTR2 217 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 WWTR1Q9GZV5 400 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 ZNF576Q9H609 170 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 MYEF2Q9P2K5 600 aaKnown RBP16.16■□□□□ 0.18
VIM-206ENST00000487938 TCRBV16S1A1N1A0A5B0 115 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 C2orf72A6NCS6 295 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 RGS11O94810 467 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 OR2A4O95047 310 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 HLA-DOBP13765 273 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 IL11P20809 199 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 MECP2P51608 486 aaKnown RBP16.16■□□□□ 0.18
VIM-206ENST00000487938 EIF2B1Q14232 305 aaKnown RBP16.16■□□□□ 0.18
VIM-206ENST00000487938 ARHGAP40Q5TG30 622 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 RNF128Q8TEB7 428 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 C8orf44Q96CB5 159 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 OR2A7Q96R45 310 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 EPHA6Q9UF33 1036 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 DHDHQ9UQ10 334 aa16.16■□□□□ 0.18
VIM-206ENST00000487938 IGLV1-36A0A0B4J1U3 117 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 TMEM272A0A1B0GTI8 110 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 A0A1W2PR77 199 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 EIF4E2O60573 245 aaKnown RBP16.15■□□□□ 0.18
VIM-206ENST00000487938 CD3DP04234 171 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 CSF1P09603 554 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 PRSS3P35030 304 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 EPHA4P54764 986 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 RAP2BP61225 183 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 AANATQ16613 207 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 SFRP5Q5T4F7 317 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 C1orf140Q5VVS0 124 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 C16orf47Q6ZP98 133 aaPredicted RBP16.15■□□□□ 0.18
VIM-206ENST00000487938 LRRC20Q8TCA0 184 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 ABHD6Q9BV23 337 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 GSX2Q9BZM3 304 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 CHST6Q9GZX3 395 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 TXNIPQ9H3M7 391 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 MKL2Q9ULH7 1088 aa16.15■□□□□ 0.18
VIM-206ENST00000487938 COA3Q9Y2R0 106 aaPredicted RBP16.15■□□□□ 0.18
VIM-206ENST00000487938 SLC22A23A1A5C7 686 aa16.15■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms