RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 NEUROG1Q92886 237 aa13.8□□□□□ -0.2
UPF3A-208ENST00000484246 NRBF2Q96F24 287 aa13.8□□□□□ -0.2
UPF3A-208ENST00000484246 SAMD8Q96LT4 415 aa13.8□□□□□ -0.2
UPF3A-208ENST00000484246 ERMAPQ96PL5 475 aaPredicted RBP13.8□□□□□ -0.2
UPF3A-208ENST00000484246 CCL19Q99731 98 aa13.8□□□□□ -0.2
UPF3A-208ENST00000484246 DHRS9Q9BPW9 319 aa13.8□□□□□ -0.2
UPF3A-208ENST00000484246 WACQ9BTA9 647 aa13.8□□□□□ -0.2
UPF3A-208ENST00000484246 SEC61A2Q9H9S3 476 aa13.8□□□□□ -0.2
UPF3A-208ENST00000484246 ZNF701Q9NV72 531 aaPredicted RBP13.8□□□□□ -0.2
UPF3A-208ENST00000484246 FAIMQ9NVQ4 179 aa13.8□□□□□ -0.2
UPF3A-208ENST00000484246 CISD1Q9NZ45 108 aaKnown RBP13.8□□□□□ -0.2
UPF3A-208ENST00000484246 IL20RAQ9UHF4 553 aa13.8□□□□□ -0.2
UPF3A-208ENST00000484246 ATP6V1G2-DDX39BF2Z307 99 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 H7C1C5 153 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 BHLHE40O14503 412 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 CIB2O75838 187 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 RAB36O95755 333 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 TP53P04637 393 aaPredicted RBP13.79□□□□□ -0.2
UPF3A-208ENST00000484246 SERPINA5P05154 406 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 CELA3BP08861 270 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 CD79AP11912 226 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 CTLA4P16410 223 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 CAPZA2P47755 286 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 GIPRP48546 466 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 LCN6P62502 163 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 RAB1AP62820 205 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 PPP1R8Q12972 351 aaKnown RBP13.79□□□□□ -0.2
UPF3A-208ENST00000484246 SPNS3Q6ZMD2 512 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 SLC16A14Q7RTX9 510 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 OR4F15Q8NGB8 312 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 OR8D4Q8NGM9 314 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 SMAP2Q8WU79 429 aaPredicted RBP13.79□□□□□ -0.2
UPF3A-208ENST00000484246 FEVQ99581 238 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 KCNS3Q9BQ31 491 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 GSX2Q9BZM3 304 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 SYT4Q9H2B2 425 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 C1orf198Q9H425 327 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 EGLN3Q9H6Z9 239 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 NTN4Q9HB63 628 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 POLE4Q9NR33 117 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 ZKSCAN7Q9P0L1 754 aaPredicted RBP13.79□□□□□ -0.2
UPF3A-208ENST00000484246 MOKQ9UQ07 419 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 BAIAP2Q9UQB8 552 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 PRR14LQ5THK1 2151 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 ALPK2Q86TB3 2170 aa13.79□□□□□ -0.2
UPF3A-208ENST00000484246 IGHV2OR16-5A0A0B4J2B6 119 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 OVOL3O00110 214 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 SOCS2O14508 198 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 GNGT2O14610 69 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 E2F6O75461 281 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 SOD3P08294 240 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 CST2P09228 141 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 FCGR1AP12314 374 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 MSR1P21757 451 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 CALCRP30988 508 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 CDKN2AP42771 156 aaKnown RBP13.78□□□□□ -0.2
UPF3A-208ENST00000484246 PTDSS1P48651 473 aaKnown RBP13.78□□□□□ -0.2
UPF3A-208ENST00000484246 ART1P52961 327 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 ATP6AP1Q15904 470 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 TMEM53Q6P2H8 277 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 SHQ1Q6PI26 577 aaKnown RBP13.78□□□□□ -0.2
UPF3A-208ENST00000484246 DNM1P34Q6PK57 102 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 YTHDF3Q7Z739 585 aaKnown RBP13.78□□□□□ -0.2
UPF3A-208ENST00000484246 TMEM179BQ7Z7N9 219 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 SYT9Q86SS6 491 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 ZNF584Q8IVC4 421 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 LNX2Q8N448 690 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 FGFBP3Q8TAT2 258 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 TMEM171Q8WVE6 324 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 DNAJC9Q8WXX5 260 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 NSMAFQ92636 917 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 SH3GL3Q99963 347 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 NIPSNAP1Q9BPW8 284 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 TRAF4Q9BUZ4 470 aaPredicted RBP13.78□□□□□ -0.2
UPF3A-208ENST00000484246 IFT27Q9BW83 186 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 KRTAP3-3Q9BYR6 98 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 KRTAP3-2Q9BYR7 98 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 PLA2G12AQ9BZM1 189 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 RACGAP1Q9H0H5 632 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 CXorf56Q9H5V9 222 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 ZNF442Q9H7R0 627 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 POU2F3Q9UKI9 436 aa13.78□□□□□ -0.2
UPF3A-208ENST00000484246 KHDRBS3O75525 346 aaKnown RBP13.77□□□□□ -0.21
UPF3A-208ENST00000484246 ZNF35P13682 527 aa13.77□□□□□ -0.21
UPF3A-208ENST00000484246 ANXA8P13928 327 aa13.77□□□□□ -0.21
UPF3A-208ENST00000484246 HIST1H1CP16403 213 aaKnown RBP13.77□□□□□ -0.21
UPF3A-208ENST00000484246 CRABP1P29762 137 aa13.77□□□□□ -0.21
UPF3A-208ENST00000484246 CDAP32320 146 aa13.77□□□□□ -0.21
UPF3A-208ENST00000484246 TTKP33981 857 aa13.77□□□□□ -0.21
UPF3A-208ENST00000484246 ACTR3P61158 418 aa13.77□□□□□ -0.21
UPF3A-208ENST00000484246 NKX6-1P78426 367 aaPredicted RBP13.77□□□□□ -0.21
UPF3A-208ENST00000484246 PIGFQ07326 219 aa13.77□□□□□ -0.21
UPF3A-208ENST00000484246 NPRL3Q12980 569 aa13.77□□□□□ -0.21
UPF3A-208ENST00000484246 C11orf71Q6IPW1 123 aa13.77□□□□□ -0.21
UPF3A-208ENST00000484246 OTOGQ6ZRI0 2925 aa13.77□□□□□ -0.21
UPF3A-208ENST00000484246 GTPBP3Q969Y2 492 aaKnown RBP13.77□□□□□ -0.21
UPF3A-208ENST00000484246 DDOQ99489 341 aa13.77□□□□□ -0.21
UPF3A-208ENST00000484246 CA10Q9NS85 328 aa13.77□□□□□ -0.21
UPF3A-208ENST00000484246 TBC1D23Q9NUY8 699 aa13.77□□□□□ -0.21
UPF3A-208ENST00000484246 PDP1Q9P0J1 537 aaPredicted RBP13.77□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms