RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 KIAA1024LP59773 190 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 PPP1CBP62140 327 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 RPS25P62851 125 aaKnown RBP12.3□□□□□ -0.44
COL6A3-209ENST00000472056 KCNJ10P78508 379 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 GAB1Q13480 694 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 NKX2-4Q9H2Z4 354 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 MRPS28Q9Y2Q9 187 aaKnown RBP12.3□□□□□ -0.44
COL6A3-209ENST00000472056 PDCD11Q14690 1871 aaKnown RBP12.3□□□□□ -0.44
COL6A3-209ENST00000472056 GLTPD2A6NH11 291 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 ZFP92A6NM28 416 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 RGS13O14921 159 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 SLC16A7O60669 478 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 COX5AP20674 150 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 CST6Q15828 149 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 BEX5Q5H9J7 111 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 WDR73Q6P4I2 378 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 CLEC14AQ86T13 490 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 CELF2-AS1Q8N7Q2 184 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 DDOQ99489 341 aa12.3□□□□□ -0.44
COL6A3-209ENST00000472056 ZNF860A6NHJ4 632 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 ST8SIA5O15466 376 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 SCO1O75880 301 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 SIX6O95475 246 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 CD68P34810 354 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-209ENST00000472056 CLINT1Q14677 625 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 VRK3Q8IV63 474 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 DVL3Q92997 716 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-209ENST00000472056 APOBEC3BQ9UH17 382 aaKnown RBP12.29□□□□□ -0.44
COL6A3-209ENST00000472056 SLC31A2O15432 143 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 BLVRBP30043 206 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-209ENST00000472056 RAB13P51153 203 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 GLYATL3Q5SZD4 288 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 GDF6Q6KF10 455 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-209ENST00000472056 TRNP1Q6NT89 227 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 DTWD2Q8NBA8 298 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 OR51A4Q8NGJ6 313 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 OR13C9Q8NGT0 318 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 PEX11GQ96HA9 241 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 SELENOIQ9C0D9 397 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 OR7C1O76099 320 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-209ENST00000472056 FUCA1P04066 466 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 ENPP1P22413 925 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 EVX1P49640 407 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 MAP2K6P52564 334 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 GATSQ8NAP1 163 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 OR13D1Q8NGV5 346 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 GDE1Q9NZC3 331 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 CRYBG1Q9Y4K1 1723 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 ZNF727A8MUV8 499 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 M0QZQ0 153 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 IGFBP1P08833 259 aaPredicted RBP12.29□□□□□ -0.44
COL6A3-209ENST00000472056 ALDOCP09972 364 aaKnown RBP12.29□□□□□ -0.44
COL6A3-209ENST00000472056 ACHEP22303 614 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 GZMKP49863 264 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 SYS1Q8N2H4 156 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 SLC35G3Q8N808 338 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 SRRQ9GZT4 340 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 FZD1Q9UP38 647 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 GABRB1P18505 474 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 DHODHQ02127 395 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 SIGIRRQ6IA17 410 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 CPEB3Q8NE35 698 aaKnown RBP12.29□□□□□ -0.44
COL6A3-209ENST00000472056 OR1D4P47884 311 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 NLRC3Q7RTR2 1065 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 L3MBTL4Q8NA19 623 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 DOCK3Q8IZD9 2030 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 TRAV36DV7A0A075B6V5 113 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 RNGTTO60942 597 aaKnown RBP12.29□□□□□ -0.44
COL6A3-209ENST00000472056 BAP18Q8IXM2 172 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 TCTEX1D1Q8N7M0 179 aa12.29□□□□□ -0.44
COL6A3-209ENST00000472056 TEAD2Q15562 447 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 SECTM1Q8WVN6 248 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 KIAA1324LA8MWY0 1029 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-209ENST00000472056 FURINP09958 794 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 H2BFWTQ7Z2G1 175 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 CDC20BQ86Y33 519 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 SLC24A4Q8NFF2 622 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 DUSP21Q9H596 190 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 NXT1Q9UKK6 140 aaKnown RBP12.28□□□□□ -0.44
COL6A3-209ENST00000472056 PATJQ8NI35 1801 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 TNFSF12-TNFSF13A0A0A6YY99 330 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 B4DEV8 164 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 TNFSF12O43508 249 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 FGF18O76093 207 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 RRASP10301 218 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 SEMG2Q02383 582 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 CLPPQ16740 277 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-209ENST00000472056 CDONQ4KMG0 1287 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 PLXDC2Q6UX71 529 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 ZNF593O00488 134 aaPredicted RBP12.28□□□□□ -0.44
COL6A3-209ENST00000472056 OMGP23515 440 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 ZP2Q05996 745 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 OR7A5Q15622 319 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 RPL7L1Q6DKI1 246 aaKnown RBP12.28□□□□□ -0.44
COL6A3-209ENST00000472056 DTD2Q96FN9 168 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 IGSF21Q96ID5 467 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 FAM72CH0Y354 149 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 FAM72AQ5TYM5 149 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 FAM72DQ6L9T8 149 aa12.28□□□□□ -0.44
COL6A3-209ENST00000472056 LSRQ86X29 649 aaPredicted RBP12.28□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 32.8 ms