RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 ZNF224Q9NZL3 707 aa12.95□□□□□ -0.34
COL9A3-209ENST00000469852 ENOPH1Q9UHY7 261 aa12.95□□□□□ -0.34
COL9A3-209ENST00000469852 B9D1Q9UPM9 204 aa12.95□□□□□ -0.34
COL9A3-209ENST00000469852 ANKHD1Q8IWZ3 2542 aaKnown RBP12.95□□□□□ -0.34
COL9A3-209ENST00000469852 A0A1W2PPL8 197 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 OR5H1A6NKK0 313 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 MPZL1O95297 269 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 IFNGP01579 166 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 HMGN1P05114 100 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 ZNF3P17036 446 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 GGT2P36268 569 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 PTDSS1P48651 473 aaKnown RBP12.94□□□□□ -0.34
COL9A3-209ENST00000469852 SH3BGRP55822 239 aaPredicted RBP12.94□□□□□ -0.34
COL9A3-209ENST00000469852 TAB1Q15750 504 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 SNAPC1Q16533 368 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 PLBD1Q6P4A8 553 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 ANKRD16Q6P6B7 361 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 SEZ6L2Q6UXD5 910 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 ZNF813Q6ZN06 617 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 ZBTB46Q86UZ6 589 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 C1orf162Q8NEQ5 155 aaPredicted RBP12.94□□□□□ -0.34
COL9A3-209ENST00000469852 STEAP2Q8NFT2 490 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 OR51L1Q8NGJ5 315 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 OR52N5Q8NH56 324 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 FNDC8Q8TC99 324 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 LRRC46Q96FV0 321 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 ZC3HAV1LQ96H79 300 aaKnown RBP12.94□□□□□ -0.34
COL9A3-209ENST00000469852 BOD1Q96IK1 185 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 HRASLS5Q96KN8 279 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 PITX2Q99697 317 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 SH3GL3Q99963 347 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 HDHD5Q9BXW7 423 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 NOX3Q9HBY0 568 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 SLC17A5Q9NRA2 495 aa12.94□□□□□ -0.34
COL9A3-209ENST00000469852 NDRG4Q9ULP0 352 aaKnown RBP12.94□□□□□ -0.34
COL9A3-209ENST00000469852 KHDRBS3O75525 346 aaKnown RBP12.93□□□□□ -0.34
COL9A3-209ENST00000469852 PATE4P0C8F1 98 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 GAAP10253 952 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 NR2C1P13056 603 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 SPI1P17947 270 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 ZNF84P51523 738 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 AQP4P55087 323 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 MRPS34P82930 218 aaKnown RBP12.93□□□□□ -0.34
COL9A3-209ENST00000469852 TGFBR3Q03167 851 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 MEP1BQ16820 701 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 ALKBH2Q6NS38 261 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 UGT2A3Q6UWM9 527 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 MEX3BQ6ZN04 569 aaKnown RBP12.93□□□□□ -0.34
COL9A3-209ENST00000469852 CPOQ8IVL8 374 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 SKA3Q8IX90 412 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 DMRTC2Q8IXT2 367 aaPredicted RBP12.93□□□□□ -0.34
COL9A3-209ENST00000469852 SLC22A24Q8N4F4 322 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 TCEANCQ8N8B7 351 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 FAM81AQ8TBF8 368 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 OTULINQ96BN8 352 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 PLEKHA8Q96JA3 519 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 IL4I1Q96RQ9 567 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 RACGAP1Q9H0H5 632 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 SEC61A2Q9H9S3 476 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 EMC7Q9NPA0 242 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 CRIM1Q9NZV1 1036 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 AASSQ9UDR5 926 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 SLC25A15Q9Y619 301 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 FKBP7Q9Y680 259 aa12.93□□□□□ -0.34
COL9A3-209ENST00000469852 LOC100130705A0A1B0GUX0 176 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 SH3D21A4FU49 640 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 PRR23D1E9PI22 279 aaPredicted RBP12.92□□□□□ -0.34
COL9A3-209ENST00000469852 TLX2O43763 284 aaPredicted RBP12.92□□□□□ -0.34
COL9A3-209ENST00000469852 CLIC3O95833 236 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 HLA-HP01893 362 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 TFP02787 698 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 PRR23D2P0DMB1 279 aaPredicted RBP12.92□□□□□ -0.34
COL9A3-209ENST00000469852 PSKH1P11801 424 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 LAP3P28838 519 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 CRABP1P29762 137 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 CENPAP49450 140 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 SLC25A1P53007 311 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 SGCAQ16586 387 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 TIMM23BQ5SRD1 257 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 LINC01590Q5TEZ4 76 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 OR7E24Q6IFN5 339 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 B3GLCTQ6Y288 498 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 CXXC5Q7LFL8 322 aaKnown RBP12.92□□□□□ -0.34
COL9A3-209ENST00000469852 LRRC18Q8N456 261 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 PROKR2Q8NFJ6 384 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 TMEM163Q8TC26 289 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 RDH12Q96NR8 316 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 SLC38A2Q96QD8 506 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 MED18Q9BUE0 208 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 C1QTNF6Q9BXI9 259 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 OR10A4Q9H209 315 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 OR51V1Q9H2C8 321 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 C8orf4Q9NR00 106 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 POLE4Q9NR33 117 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 ZNF226Q9NYT6 803 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 NPAP1Q9NZP6 1156 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 GMPPBQ9Y5P6 360 aa12.92□□□□□ -0.34
COL9A3-209ENST00000469852 ARPC4-TTLL3A0A0A6YYG9 625 aa12.91□□□□□ -0.34
COL9A3-209ENST00000469852 TVP23AA6NH52 213 aa12.91□□□□□ -0.34
COL9A3-209ENST00000469852 TUBAL3A6NHL2 446 aa12.91□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms