RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 TOP3AQ13472 1001 aaPredicted RBP10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 ATP6AP1Q15904 470 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 GABRA6Q16445 453 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 ZNF672Q499Z4 452 aaPredicted RBP10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 C9orf135Q5VTT2 229 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 FAM205BPQ63HN1 556 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 SMARCD3Q6STE5 483 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 THSD4Q6ZMP0 1018 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 ZNF620Q6ZNG0 422 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 FAM122BQ7Z309 247 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 DEPDC4Q8N2C3 294 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 NOXO1Q8NFA2 376 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 ZNF519Q8TB69 540 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 FANK1Q8TC84 345 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 GIPC3Q8TF64 312 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 TMEM54Q969K7 222 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 RADILQ96JH8 1075 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 TSPAN32Q96QS1 320 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 DGCR6LQ9BY27 220 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 MRPL13Q9BYD1 178 aaKnown RBP10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 ULBP2Q9BZM5 246 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 GRIP2Q9C0E4 1043 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 OR52D1Q9H346 318 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 DENND2DQ9H6A0 471 aaPredicted RBP10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 CRLF2Q9HC73 371 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 GPR35Q9HC97 309 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 B3GAT2Q9NPZ5 323 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 NRIP3Q9NQ35 241 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 ZNF346Q9UL40 294 aaKnown RBP10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 KCNS2Q9ULS6 477 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 MGAT4BQ9UQ53 548 aa10.37□□□□□ -0.75
SQSTM1-206ENST00000466342 A6NIZ1 184 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 SLC25A16P16260 332 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 HNF1AP20823 631 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 GSTM3P21266 225 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 SLC6A6P31641 620 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 ARHGDIAP52565 204 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 CLRN1P58418 232 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 RAP1BP61224 184 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 RAP1AP62834 184 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 ERVK-25P63136 954 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 HIST3H3Q16695 136 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 CEACAM16Q2WEN9 425 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 PGGHGQ32M88 737 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 RFX4Q33E94 735 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 FAM166AQ6J272 317 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 RPL13AP3Q6NVV1 102 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 ZFP1Q6P2D0 407 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 SHQ1Q6PI26 577 aaKnown RBP10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 TMEM108Q6UXF1 575 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 DPY19L2P2Q6ZN68 376 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 RASSF6Q6ZTQ3 369 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 C17orf78Q8N4C9 275 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 OR1K1Q8NGR3 316 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 PYDC1Q8WXC3 89 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 HDAC2Q92769 488 aaKnown RBP10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 NRBF2Q96F24 287 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 C1orf159Q96HA4 380 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 BOD1Q96IK1 185 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 FEVQ99581 238 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 NTN4Q9HB63 628 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 GLTPQ9NZD2 209 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 PDP1Q9P0J1 537 aaPredicted RBP10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 GRHPRQ9UBQ7 328 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 ADAM18Q9Y3Q7 739 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 CDH10Q9Y6N8 788 aa10.36□□□□□ -0.75
SQSTM1-206ENST00000466342 ZNF99A8MXY4 864 aaPredicted RBP10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 CD8AP01732 235 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 NR2C1P13056 603 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 APEHP13798 732 aaKnown RBP10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 CDH2P19022 906 aaPredicted RBP10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 PTAFRP25105 342 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 SDHAP31040 664 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 RPS6KA3P51812 740 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 ZNF133P52736 654 aaPredicted RBP10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 NUDT6P53370 316 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 GPR139Q6DWJ6 353 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 KLHL17Q6TDP4 642 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 CLEC2AQ6UVW9 174 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 CD300LDQ6UXZ3 194 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 C10orf67Q8IYJ2 551 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 HS3ST5Q8IZT8 346 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 CLDN22Q8N7P3 220 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 OR5K1Q8NHB7 308 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 LRTOMTQ8WZ04 291 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 NEUROG1Q92886 237 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 ZNF837Q96EG3 531 aaPredicted RBP10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 SAMD8Q96LT4 415 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 Q96M85 177 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 ZNF570Q96NI8 536 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 NIPSNAP1Q9BPW8 284 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 TRAF4Q9BUZ4 470 aaPredicted RBP10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 ALG12Q9BV10 488 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 NELFAQ9H3P2 528 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 EGLN3Q9H6Z9 239 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 CHODLQ9H9P2 273 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 IL20Q9NYY1 176 aa10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 CISD1Q9NZ45 108 aaKnown RBP10.35□□□□□ -0.75
SQSTM1-206ENST00000466342 IL20RAQ9UHF4 553 aa10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms