RNA–Protein interactions for RNA: ENST00000466159.6

SYNE1-217, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best) BASIC

Gene SYNE1, Length 2,610 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-217ENST00000466159 RANBP3Q9H6Z4 567 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-217ENST00000466159 SUSD2Q9UGT4 822 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 STEAP1Q9UHE8 339 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 COA3Q9Y2R0 106 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-217ENST00000466159 CACNA1EQ15878 2313 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 CCDC85CA6NKD9 419 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 FTCDNL1E5RQL4 147 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 MS4A18H0YCH9 400 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 ACOT7O00154 380 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 ARPC1BO15143 372 aaKnown RBP8.04□□□□□ -1.12
SYNE1-217ENST00000466159 GLSO94925 669 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-217ENST00000466159 ITGA5P08648 1049 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 AP3S2P59780 193 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 EIF2B1Q14232 305 aaKnown RBP8.04□□□□□ -1.12
SYNE1-217ENST00000466159 MS4A18Q3C1V0 323 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 LINC00303Q3SY05 128 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 TEX30Q5JUR7 227 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 RHBDD2Q6NTF9 364 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 FDX2Q6P4F2 183 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 ARSKQ6UWY0 536 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 FGD2Q7Z6J4 655 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 BIVMQ86UB2 503 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 ZNF227Q86WZ6 799 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 KMT5CQ86Y97 462 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 STK35Q8TDR2 534 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 RNF128Q8TEB7 428 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 NXPE2Q96DL1 559 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 ABHD6Q9BV23 337 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 SEMA4CQ9C0C4 833 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 ZNF275Q9NSD4 429 aaPredicted RBP8.04□□□□□ -1.12
SYNE1-217ENST00000466159 MED11Q9P086 117 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 VDAC3Q9Y277 283 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 PI4KAP42356 2102 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 EXPH5Q8NEV8 1989 aa8.04□□□□□ -1.12
SYNE1-217ENST00000466159 MEIKINA0A087WXM9 373 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 HSPB2A8KAH6 182 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 SHISA8B8ZZ34 492 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 RAD52P43351 418 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 SELENOPP49908 381 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 SLC26A5P58743 744 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 ROM1Q03395 351 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 FMODQ06828 376 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 CAMK2DQ13557 499 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 OR7A5Q15622 319 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 HSPB2Q16082 182 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 YOD1Q5VVQ6 348 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-217ENST00000466159 NDUFAF7Q7L592 441 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 ANKRD37Q7Z713 158 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 LUZP2Q86TE4 346 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 EID2Q8N6I1 236 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 PLPP7Q8NBV4 271 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 NFAM1Q8NET5 270 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-217ENST00000466159 ASB17Q8WXJ9 295 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 SEC22CQ9BRL7 303 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 TGIF2Q9GZN2 237 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 NOX3Q9HBY0 568 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 DLL4Q9NR61 685 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 MRPL39Q9NYK5 338 aaKnown RBP8.03□□□□□ -1.12
SYNE1-217ENST00000466159 LRP12Q9Y561 859 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 HRH3Q9Y5N1 445 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 CPED1A4D0V7 1026 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 NAP1L6A6NFF2 107 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 XRCC3O43542 346 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 OR2T1O43869 369 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 CTAG2O75638 210 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 IGHMP01871 453 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 ALDOBP05062 364 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 FCER2P06734 321 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 DCNP07585 359 aaKnown RBP8.03□□□□□ -1.12
SYNE1-217ENST00000466159 HEXBP07686 556 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 IFNGR1P15260 489 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 POU3F4P49335 361 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 MRPS10P82664 201 aaKnown RBP8.03□□□□□ -1.12
SYNE1-217ENST00000466159 GLO1Q04760 184 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 PUDPQ08623 228 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 ANGPT1Q15389 498 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 ELFN2Q5R3F8 820 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 OLFML2AQ68BL7 652 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 SLC25A25Q6KCM7 469 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 TMEM234Q8WY98 164 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 GPR137Q96N19 417 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 OR6C1Q96RD1 312 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 METTL17Q9H7H0 456 aaPredicted RBP8.03□□□□□ -1.12
SYNE1-217ENST00000466159 FBXL3Q9UKT7 428 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 PCDHGA5Q9Y5G8 931 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 RALGAPA1Q6GYQ0 2036 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 FRYLO94915 3013 aa8.03□□□□□ -1.12
SYNE1-217ENST00000466159 IGKV1D-43A0A0B4J1Z2 117 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 TMEM200CA6NKL6 621 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 K7ESF4 209 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 TOXO94900 526 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 KDM4BO94953 1096 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 LDOC1O95751 146 aaPredicted RBP8.02□□□□□ -1.12
SYNE1-217ENST00000466159 ANXA7P20073 488 aaKnown RBP8.02□□□□□ -1.12
SYNE1-217ENST00000466159 MNDAP41218 407 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 RIDAP52758 137 aaKnown RBP8.02□□□□□ -1.12
SYNE1-217ENST00000466159 BLVRAP53004 296 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 GUCA2AQ02747 115 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 C2orf76Q3KRA6 126 aa8.02□□□□□ -1.12
SYNE1-217ENST00000466159 NKAIN1Q4KMZ8 207 aa8.02□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms