RNA–Protein interactions for RNA: ENST00000454354.1

USP40-210, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 348 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-210ENST00000454354 RPS6KA6Q9UK32 745 aa10.35□□□□□ -0.75
USP40-210ENST00000454354 ZNF346Q9UL40 294 aaKnown RBP10.35□□□□□ -0.75
USP40-210ENST00000454354 TMEM5Q9Y2B1 443 aa10.35□□□□□ -0.75
USP40-210ENST00000454354 STAB1Q9NY15 2570 aa10.35□□□□□ -0.75
USP40-210ENST00000454354 IGLV3-9A0A075B6K5 115 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 IGHV4-61A0A0C4DH41 118 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 IQCMA0A1B0GVH7 501 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 A0A1W2PRQ8 180 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 A6NIZ1 184 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 EFCAB9A8MZ26 197 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 CDC42EP2O14613 210 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 ZNF250P15622 560 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 ZNF16P17020 682 aaPredicted RBP10.34□□□□□ -0.75
USP40-210ENST00000454354 ZNF23P17027 643 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 CDAP32320 146 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 GZMKP49863 264 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 RAP1BP61224 184 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 RAP1AP62834 184 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 PLP2Q04941 152 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 TOP3AQ13472 1001 aaPredicted RBP10.34□□□□□ -0.75
USP40-210ENST00000454354 RIN1Q13671 783 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 DGCR6Q14129 220 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 CARTPTQ16568 116 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 TBC1D28Q2M2D7 210 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 FAM27BQ5VT28 67 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 GLYATQ6IB77 296 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 RGS7BPQ6MZT1 257 aaPredicted RBP10.34□□□□□ -0.75
USP40-210ENST00000454354 TBPL2Q6SJ96 375 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 ZNF730Q6ZMV8 503 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 IGFN1Q86VF2 1251 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 LRP11Q86VZ4 500 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 MEX3DQ86XN8 651 aaKnown RBP10.34□□□□□ -0.75
USP40-210ENST00000454354 LRRC18Q8N456 261 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 OR1J2Q8NGS2 313 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 OR13C2Q8NGS9 318 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 OR51A7Q8NH64 312 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 C7orf34Q96L11 122 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 DHRS1Q96LJ7 313 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 RBP7Q96R05 134 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 SYT3Q9BQG1 590 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 BPESC1Q9GZL8 116 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 FAM107BQ9H098 131 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 MS4A5Q9H3V2 200 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 RNF121Q9H920 327 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 CDH20Q9HBT6 801 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 DCAF13Q9NV06 445 aaKnown RBP10.34□□□□□ -0.75
USP40-210ENST00000454354 NDUFAF4Q9P032 175 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 MYEF2Q9P2K5 600 aaKnown RBP10.34□□□□□ -0.75
USP40-210ENST00000454354 REV1Q9UBZ9 1251 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 EGFL7Q9UHF1 273 aa10.34□□□□□ -0.75
USP40-210ENST00000454354 SAMD4AQ9UPU9 718 aaKnown RBP10.34□□□□□ -0.75
USP40-210ENST00000454354 SH3PXD2BA1X283 911 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 CST2P09228 141 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 TACSTD2P09758 323 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 CCL2P13500 99 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 HSD17B1P14061 328 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 ZNF26P17031 533 aaPredicted RBP10.33□□□□□ -0.76
USP40-210ENST00000454354 RHCEP18577 417 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 APEX1P27695 318 aaKnown RBP10.33□□□□□ -0.76
USP40-210ENST00000454354 GPR4P46093 362 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 LIMS1P48059 325 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 ZBED5Q49AG3 693 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 PABPC1L2AQ5JQF8 200 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 FAM122BQ7Z309 247 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 CPLX4Q7Z7G2 160 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 FAM86B1Q8N7N1 296 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 CLDN22Q8N7P3 220 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 ARIH2OSQ8N7S6 290 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 CPEB3Q8NE35 698 aaKnown RBP10.33□□□□□ -0.76
USP40-210ENST00000454354 UBASH3BQ8TF42 649 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 NSMAFQ92636 917 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 GPX7Q96SL4 187 aaPredicted RBP10.33□□□□□ -0.76
USP40-210ENST00000454354 LRMDAQ9H2I8 198 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 KCNN2Q9H2S1 579 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 TPK1Q9H3S4 243 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 GORASP2Q9H8Y8 452 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 CDC42EP3Q9UKI2 254 aa10.33□□□□□ -0.76
USP40-210ENST00000454354 AHCYL1O43865 530 aa10.32□□□□□ -0.76
USP40-210ENST00000454354 ICMTO60725 284 aa10.32□□□□□ -0.76
USP40-210ENST00000454354 LILRA1O75019 489 aa10.32□□□□□ -0.76
USP40-210ENST00000454354 SEMG1P04279 462 aa10.32□□□□□ -0.76
USP40-210ENST00000454354 H1F0P07305 194 aaKnown RBP10.32□□□□□ -0.76
USP40-210ENST00000454354 CD14P08571 375 aa10.32□□□□□ -0.76
USP40-210ENST00000454354 FAM157BP0CG42 384 aa10.32□□□□□ -0.76
USP40-210ENST00000454354 APEHP13798 732 aaKnown RBP10.32□□□□□ -0.76
USP40-210ENST00000454354 ZNF32P17041 273 aa10.32□□□□□ -0.76
USP40-210ENST00000454354 APLNRP35414 380 aa10.32□□□□□ -0.76
USP40-210ENST00000454354 ALDH3B1P43353 468 aa10.32□□□□□ -0.76
USP40-210ENST00000454354 UCP2P55851 309 aa10.32□□□□□ -0.76
USP40-210ENST00000454354 KLF3P57682 345 aaPredicted RBP10.32□□□□□ -0.76
USP40-210ENST00000454354 ERVK-25P63136 954 aa10.32□□□□□ -0.76
USP40-210ENST00000454354 MRPS11P82912 194 aaKnown RBP10.32□□□□□ -0.76
USP40-210ENST00000454354 HSF2Q03933 536 aa10.32□□□□□ -0.76
USP40-210ENST00000454354 MAD2L1BPQ15013 274 aaPredicted RBP10.32□□□□□ -0.76
USP40-210ENST00000454354 CHRFAM7AQ494W8 412 aa10.32□□□□□ -0.76
USP40-210ENST00000454354 IQCCQ4KMZ1 466 aa10.32□□□□□ -0.76
USP40-210ENST00000454354 MESTQ5EB52 335 aa10.32□□□□□ -0.76
USP40-210ENST00000454354 ELFN2Q5R3F8 820 aa10.32□□□□□ -0.76
USP40-210ENST00000454354 PODNL1Q6PEZ8 512 aa10.32□□□□□ -0.76
USP40-210ENST00000454354 RRM2BQ7LG56 351 aa10.32□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms