RNA–Protein interactions for RNA: ENST00000450940.5

USP40-207, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 670 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-207ENST00000450940 M0R233 179 aa16.65■□□□□ 0.26
USP40-207ENST00000450940 TACSTD2P09758 323 aa16.65■□□□□ 0.26
USP40-207ENST00000450940 ZNF250P15622 560 aa16.65■□□□□ 0.26
USP40-207ENST00000450940 ZNF23P17027 643 aa16.65■□□□□ 0.26
USP40-207ENST00000450940 CDAP32320 146 aa16.65■□□□□ 0.26
USP40-207ENST00000450940 PLP2Q04941 152 aa16.65■□□□□ 0.26
USP40-207ENST00000450940 FMODQ06828 376 aa16.65■□□□□ 0.26
USP40-207ENST00000450940 RIN1Q13671 783 aa16.65■□□□□ 0.26
USP40-207ENST00000450940 TBPL2Q6SJ96 375 aa16.65■□□□□ 0.26
USP40-207ENST00000450940 ZNF730Q6ZMV8 503 aa16.65■□□□□ 0.26
USP40-207ENST00000450940 FOXL2NBQ6ZUU3 175 aa16.65■□□□□ 0.26
USP40-207ENST00000450940 CYP4Z1Q86W10 505 aa16.65■□□□□ 0.26
USP40-207ENST00000450940 MEX3DQ86XN8 651 aaKnown RBP16.65■□□□□ 0.26
USP40-207ENST00000450940 LRRC18Q8N456 261 aa16.65■□□□□ 0.26
USP40-207ENST00000450940 SLC7A13Q8TCU3 470 aa16.65■□□□□ 0.26
USP40-207ENST00000450940 C7orf34Q96L11 122 aa16.65■□□□□ 0.26
USP40-207ENST00000450940 TSPAN32Q96QS1 320 aa16.65■□□□□ 0.26
USP40-207ENST00000450940 SYT3Q9BQG1 590 aa16.65■□□□□ 0.26
USP40-207ENST00000450940 BPESC1Q9GZL8 116 aa16.65■□□□□ 0.26
USP40-207ENST00000450940 DCAF13Q9NV06 445 aaKnown RBP16.65■□□□□ 0.26
USP40-207ENST00000450940 MYEF2Q9P2K5 600 aaKnown RBP16.65■□□□□ 0.26
USP40-207ENST00000450940 MXRA5Q9NR99 2828 aa16.65■□□□□ 0.26
USP40-207ENST00000450940 DNHD1Q96M86 4753 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 IGLV3-9A0A075B6K5 115 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 TRAV27A0A087WT01 109 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 IQCMA0A1B0GVH7 501 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 A0A1W2PRQ8 180 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 A6NIZ1 184 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 CDC42EP2O14613 210 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 CCL2P13500 99 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 RAP1BP61224 184 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 RAP1AP62834 184 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 CD47Q08722 323 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 TOP3AQ13472 1001 aaPredicted RBP16.64■□□□□ 0.25
USP40-207ENST00000450940 DGCR6Q14129 220 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 CARTPTQ16568 116 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 TBC1D28Q2M2D7 210 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 CHRFAM7AQ494W8 412 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 PABPC1L2AQ5JQF8 200 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 GLYATQ6IB77 296 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 IGFN1Q86VF2 1251 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 ARIH2OSQ8N7S6 290 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 CPEB3Q8NE35 698 aaKnown RBP16.64■□□□□ 0.25
USP40-207ENST00000450940 OR13C2Q8NGS9 318 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 NSRP1Q9H0G5 558 aaKnown RBP16.64■□□□□ 0.25
USP40-207ENST00000450940 LRMDAQ9H2I8 198 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 KCNN2Q9H2S1 579 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 GORASP2Q9H8Y8 452 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 CDH20Q9HBT6 801 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 NDUFAF4Q9P032 175 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 EGFL7Q9UHF1 273 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 COL6A5A8TX70 2615 aa16.64■□□□□ 0.25
USP40-207ENST00000450940 LILRA1O75019 489 aa16.63■□□□□ 0.25
USP40-207ENST00000450940 PTP4A3O75365 173 aa16.63■□□□□ 0.25
USP40-207ENST00000450940 APEHP13798 732 aaKnown RBP16.63■□□□□ 0.25
USP40-207ENST00000450940 ZNF26P17031 533 aaPredicted RBP16.63■□□□□ 0.25
USP40-207ENST00000450940 ZNF32P17041 273 aa16.63■□□□□ 0.25
USP40-207ENST00000450940 RHCEP18577 417 aa16.63■□□□□ 0.25
USP40-207ENST00000450940 RAD52P43351 418 aa16.63■□□□□ 0.25
USP40-207ENST00000450940 UCP2P55851 309 aa16.63■□□□□ 0.25
USP40-207ENST00000450940 ZBED5Q49AG3 693 aa16.63■□□□□ 0.25
USP40-207ENST00000450940 RGS7BPQ6MZT1 257 aaPredicted RBP16.63■□□□□ 0.25
USP40-207ENST00000450940 CPLX4Q7Z7G2 160 aa16.63■□□□□ 0.25
USP40-207ENST00000450940 CLDN22Q8N7P3 220 aa16.63■□□□□ 0.25
USP40-207ENST00000450940 NSMAFQ92636 917 aa16.63■□□□□ 0.25
USP40-207ENST00000450940 MSI2Q96DH6 328 aaKnown RBP16.63■□□□□ 0.25
USP40-207ENST00000450940 POM121L2Q96KW2 1035 aa16.63■□□□□ 0.25
USP40-207ENST00000450940 MDFIQ99750 246 aa16.63■□□□□ 0.25
USP40-207ENST00000450940 BCL2L14Q9BZR8 327 aa16.63■□□□□ 0.25
USP40-207ENST00000450940 FAM107BQ9H098 131 aa16.63■□□□□ 0.25
USP40-207ENST00000450940 TPK1Q9H3S4 243 aa16.63■□□□□ 0.25
USP40-207ENST00000450940 DUSP13Q9UII6 198 aa16.63■□□□□ 0.25
USP40-207ENST00000450940 CDC42EP3Q9UKI2 254 aa16.63■□□□□ 0.25
USP40-207ENST00000450940 FZR1Q9UM11 496 aa16.63■□□□□ 0.25
USP40-207ENST00000450940 TMEM5Q9Y2B1 443 aa16.63■□□□□ 0.25
USP40-207ENST00000450940 AHCYL1O43865 530 aa16.62■□□□□ 0.25
USP40-207ENST00000450940 H1F0P07305 194 aaKnown RBP16.62■□□□□ 0.25
USP40-207ENST00000450940 CD14P08571 375 aa16.62■□□□□ 0.25
USP40-207ENST00000450940 CST2P09228 141 aa16.62■□□□□ 0.25
USP40-207ENST00000450940 FAM157BP0CG42 384 aa16.62■□□□□ 0.25
USP40-207ENST00000450940 ZNF16P17020 682 aaPredicted RBP16.62■□□□□ 0.25
USP40-207ENST00000450940 APEX1P27695 318 aaKnown RBP16.62■□□□□ 0.25
USP40-207ENST00000450940 ALDH3B1P43353 468 aa16.62■□□□□ 0.25
USP40-207ENST00000450940 GPR4P46093 362 aa16.62■□□□□ 0.25
USP40-207ENST00000450940 SGCAQ16586 387 aa16.62■□□□□ 0.25
USP40-207ENST00000450940 IQCCQ4KMZ1 466 aa16.62■□□□□ 0.25
USP40-207ENST00000450940 ELFN2Q5R3F8 820 aa16.62■□□□□ 0.25
USP40-207ENST00000450940 PODNL1Q6PEZ8 512 aa16.62■□□□□ 0.25
USP40-207ENST00000450940 RRM2BQ7LG56 351 aa16.62■□□□□ 0.25
USP40-207ENST00000450940 FAM122BQ7Z309 247 aa16.62■□□□□ 0.25
USP40-207ENST00000450940 PIP4P2Q8N4L2 257 aa16.62■□□□□ 0.25
USP40-207ENST00000450940 HPS1Q92902 700 aa16.62■□□□□ 0.25
USP40-207ENST00000450940 DHRS1Q96LJ7 313 aa16.62■□□□□ 0.25
USP40-207ENST00000450940 CCNB1IP1Q9NPC3 277 aa16.62■□□□□ 0.25
USP40-207ENST00000450940 ADA2Q9NZK5 511 aa16.62■□□□□ 0.25
USP40-207ENST00000450940 SAMD4AQ9UPU9 718 aaKnown RBP16.62■□□□□ 0.25
USP40-207ENST00000450940 LMX1BO60663 402 aa16.61■□□□□ 0.25
USP40-207ENST00000450940 ICMTO60725 284 aa16.61■□□□□ 0.25
USP40-207ENST00000450940 HSD17B1P14061 328 aa16.61■□□□□ 0.25
USP40-207ENST00000450940 STOMP27105 288 aa16.61■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms