RNA–Protein interactions for RNA: ENST00000448905.6

HMGB3-204, Transcript of high mobility group box 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HMGB3, Length 812 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-204ENST00000448905 SYT14Q8NB59 555 aa11.33□□□□□ -0.6
HMGB3-204ENST00000448905 VANGL1Q8TAA9 524 aaPredicted RBP11.33□□□□□ -0.6
HMGB3-204ENST00000448905 ST7LQ8TDW4 575 aa11.33□□□□□ -0.6
HMGB3-204ENST00000448905 TLCD1Q96CP7 247 aa11.33□□□□□ -0.6
HMGB3-204ENST00000448905 DIRC2Q96SL1 478 aa11.33□□□□□ -0.6
HMGB3-204ENST00000448905 GAL3ST1Q99999 423 aa11.33□□□□□ -0.6
HMGB3-204ENST00000448905 IKZF5Q9H5V7 419 aa11.33□□□□□ -0.6
HMGB3-204ENST00000448905 TMBIM4Q9HC24 238 aa11.33□□□□□ -0.6
HMGB3-204ENST00000448905 TRIM33Q9UPN9 1127 aa11.33□□□□□ -0.6
HMGB3-204ENST00000448905 WIPI2Q9Y4P8 454 aa11.33□□□□□ -0.6
HMGB3-204ENST00000448905 ANK2Q01484 3957 aa11.32□□□□□ -0.6
HMGB3-204ENST00000448905 GMNCA6NCL1 334 aa11.32□□□□□ -0.6
HMGB3-204ENST00000448905 ASAH2BP0C7U1 165 aa11.32□□□□□ -0.6
HMGB3-204ENST00000448905 ACADSP16219 412 aa11.32□□□□□ -0.6
HMGB3-204ENST00000448905 FUT1P19526 365 aa11.32□□□□□ -0.6
HMGB3-204ENST00000448905 GDI2P50395 445 aaKnown RBP11.32□□□□□ -0.6
HMGB3-204ENST00000448905 MRPS34P82930 218 aaKnown RBP11.32□□□□□ -0.6
HMGB3-204ENST00000448905 SGCAQ16586 387 aa11.32□□□□□ -0.6
HMGB3-204ENST00000448905 ZMAT1Q5H9K5 638 aa11.32□□□□□ -0.6
HMGB3-204ENST00000448905 PTOV1Q86YD1 416 aa11.32□□□□□ -0.6
HMGB3-204ENST00000448905 DYDC1Q8WWB3 177 aa11.32□□□□□ -0.6
HMGB3-204ENST00000448905 TSPAN32Q96QS1 320 aa11.32□□□□□ -0.6
HMGB3-204ENST00000448905 RBP7Q96R05 134 aa11.32□□□□□ -0.6
HMGB3-204ENST00000448905 ZNF347Q96SE7 839 aa11.32□□□□□ -0.6
HMGB3-204ENST00000448905 EBF4Q9BQW3 602 aa11.32□□□□□ -0.6
HMGB3-204ENST00000448905 CPPED1Q9BRF8 314 aaPredicted RBP11.32□□□□□ -0.6
HMGB3-204ENST00000448905 MRPL13Q9BYD1 178 aaKnown RBP11.32□□□□□ -0.6
HMGB3-204ENST00000448905 TMPRSS13Q9BYE2 586 aa11.32□□□□□ -0.6
HMGB3-204ENST00000448905 SMURF2Q9HAU4 748 aa11.32□□□□□ -0.6
HMGB3-204ENST00000448905 INIPQ9NRY2 104 aa11.32□□□□□ -0.6
HMGB3-204ENST00000448905 CGGBP1Q9UFW8 167 aaPredicted RBP11.32□□□□□ -0.6
HMGB3-204ENST00000448905 ZDHHC8Q9ULC8 765 aa11.32□□□□□ -0.6
HMGB3-204ENST00000448905 ISPDA4D126 451 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 C5orf49A4QMS7 147 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 SPRY3O43610 288 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 AVPP01185 164 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 IFNA14P01570 189 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 IGHV2-5P01817 119 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 MT-ND1P03886 318 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 OPN1SWP03999 348 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 F13BP05160 661 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 EGR1P18146 543 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 IFNA8P32881 189 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 RBM34P42696 430 aaKnown RBP11.31□□□□□ -0.6
HMGB3-204ENST00000448905 ARHGDIAP52565 204 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 PCBD1P61457 104 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 FOXL1Q12952 345 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 PABPC1L2AQ5JQF8 200 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 THEM4Q5T1C6 240 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 C1orf229Q6ZS94 237 aaPredicted RBP11.31□□□□□ -0.6
HMGB3-204ENST00000448905 ZER1Q7Z7L7 766 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 DHDDSQ86SQ9 333 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 RBM45Q8IUH3 476 aaKnown RBP11.31□□□□□ -0.6
HMGB3-204ENST00000448905 GPR32P1Q8NGA4 272 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 FNDC8Q8TC99 324 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 TSPEARQ8WU66 669 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 CGREF1Q99674 301 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 GPA33Q99795 319 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 SH3GL1Q99961 368 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 PCDHAC1Q9H158 963 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 NANOGQ9H9S0 305 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 ELOVL3Q9HB03 270 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 BAG5Q9UL15 447 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 TIMM10BQ9Y5J6 103 aa11.31□□□□□ -0.6
HMGB3-204ENST00000448905 HTR3EA5X5Y0 456 aa11.3□□□□□ -0.6
HMGB3-204ENST00000448905 DEAF1O75398 565 aaPredicted RBP11.3□□□□□ -0.6
HMGB3-204ENST00000448905 FOXH1O75593 365 aa11.3□□□□□ -0.6
HMGB3-204ENST00000448905 TRMUO75648 421 aaKnown RBP11.3□□□□□ -0.6
HMGB3-204ENST00000448905 IGF2P01344 180 aa11.3□□□□□ -0.6
HMGB3-204ENST00000448905 MMP7P09237 267 aaPredicted RBP11.3□□□□□ -0.6
HMGB3-204ENST00000448905 UGT2B15P54855 530 aa11.3□□□□□ -0.6
HMGB3-204ENST00000448905 TAS2R41P59536 307 aa11.3□□□□□ -0.6
HMGB3-204ENST00000448905 ERVS71-1P61550 626 aa11.3□□□□□ -0.6
HMGB3-204ENST00000448905 GLO1Q04760 184 aa11.3□□□□□ -0.6
HMGB3-204ENST00000448905 RPL18Q07020 188 aaKnown RBP11.3□□□□□ -0.6
HMGB3-204ENST00000448905 NFYCQ13952 458 aa11.3□□□□□ -0.6
HMGB3-204ENST00000448905 TAF11Q15544 211 aa11.3□□□□□ -0.6
HMGB3-204ENST00000448905 C10orf128Q5T292 105 aa11.3□□□□□ -0.6
HMGB3-204ENST00000448905 DPP10Q8N608 796 aa11.3□□□□□ -0.6
HMGB3-204ENST00000448905 NOXO1Q8NFA2 376 aa11.3□□□□□ -0.6
HMGB3-204ENST00000448905 SGTBQ96EQ0 304 aa11.3□□□□□ -0.6
HMGB3-204ENST00000448905 ZNF426Q9BUY5 554 aa11.3□□□□□ -0.6
HMGB3-204ENST00000448905 POLR2J2Q9GZM3 115 aaKnown RBP11.3□□□□□ -0.6
HMGB3-204ENST00000448905 POLR2J3Q9H1A7 115 aaKnown RBP11.3□□□□□ -0.6
HMGB3-204ENST00000448905 KAT8Q9H7Z6 458 aaKnown RBP11.3□□□□□ -0.6
HMGB3-204ENST00000448905 UBAP1Q9NZ09 502 aa11.3□□□□□ -0.6
HMGB3-204ENST00000448905 SH3GLB1Q9Y371 365 aa11.3□□□□□ -0.6
HMGB3-204ENST00000448905 PPIAL4EA0A075B759 164 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 PPIAL4CA0A0B4J2A2 164 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 PPIAL4DF5H284 164 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 OR7A10O76100 309 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 PRSS23O95084 383 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 LYPD3O95274 346 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 IGHV1-46P01743 117 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 THY1P04216 161 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 PPIAL4FP0DN26 164 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 TUBG1P23258 451 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 TNFSF4P23510 183 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 AQP2P41181 271 aa11.29□□□□□ -0.6
HMGB3-204ENST00000448905 MMP15P51511 669 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms