RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 MACROD1Q9BQ69 325 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 DNMT3BQ9UBC3 853 aaKnown RBP6.64□□□□□ -1.35
VPS53-204ENST00000437048 MYO7BQ6PIF6 2116 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 FZD6O60353 706 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 RPS23P62266 143 aaKnown RBP6.64□□□□□ -1.35
VPS53-204ENST00000437048 UBE2ZQ9H832 354 aaPredicted RBP6.64□□□□□ -1.35
VPS53-204ENST00000437048 B3GALT1Q9Y5Z6 326 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 PCNX2A6NKB5 2137 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 AGPAT2O15120 278 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 APEHP13798 732 aaKnown RBP6.64□□□□□ -1.35
VPS53-204ENST00000437048 CPMP14384 443 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 IL2RGP31785 369 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 SAXO2Q658L1 398 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 OR13C5Q8NGS8 318 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 OR8U1Q8NH10 309 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 ASB11Q8WXH4 323 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 GHSRQ92847 366 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 NOX4Q9NPH5 578 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 A0A0A6YYJ9 748 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 CLDN7O95471 211 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 ACP5P13686 325 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 RPL12P30050 165 aaKnown RBP6.64□□□□□ -1.35
VPS53-204ENST00000437048 OR52W1Q6IF63 320 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 OLIG1Q8TAK6 271 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 SMIM12Q96EX1 92 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 ZNF764Q96H86 408 aaPredicted RBP6.64□□□□□ -1.35
VPS53-204ENST00000437048 EGLN2Q96KS0 407 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 FOXJ3Q9UPW0 622 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 H3BSH0 61 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 PLSCR1O15162 318 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 PGA4P0DJD7 388 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 PGA5P0DJD9 388 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 BMPR1AP36894 532 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 SLC6A11P48066 632 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 REC114Q7Z4M0 266 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 UBAC2Q8NBM4 344 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 ZNF738Q8NE65 137 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 DDOQ99489 341 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 FBRSL1Q9HCM7 1045 aaKnown RBP6.64□□□□□ -1.35
VPS53-204ENST00000437048 LYRM4Q9HD34 91 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 FKBP11Q9NYL4 201 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 SSUH2Q9Y2M2 353 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 RICTORQ6R327 1708 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 PTNP21246 168 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 ITGB7P26010 798 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 CCR6P51684 374 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 SYPL2Q5VXT5 272 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 TXNDC8Q6A555 127 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 RGMBQ6NW40 437 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 FAHD1Q6P587 224 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 APCDD1Q8J025 514 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 SLC35E1Q96K37 410 aa6.64□□□□□ -1.35
VPS53-204ENST00000437048 MAN2B1O00754 1011 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 OR2B8PP59922 312 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 PAFAH1B2P68402 229 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 VGLL4Q14135 290 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 PRAMEF20Q5VT98 475 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 TMPRSS11FQ6ZWK6 438 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 EXD3Q8N9H8 876 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 STXBP6Q8NFX7 210 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 NAT6Q93015 286 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 YIPF1Q9Y548 306 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 PLSCR5A0PG75 271 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 IFITM5A6NNB3 132 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 FBXO24O75426 580 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 LCATP04180 440 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 EBPQ15125 230 aaKnown RBP6.63□□□□□ -1.35
VPS53-204ENST00000437048 CDHR3Q6ZTQ4 885 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 FGF14Q92915 247 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 NUDT16L1Q9BRJ7 211 aaKnown RBP6.63□□□□□ -1.35
VPS53-204ENST00000437048 AK3Q9UIJ7 227 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 DPPA4Q7L190 304 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 DUSP18Q8NEJ0 188 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 NDRG1Q92597 394 aaKnown RBP6.63□□□□□ -1.35
VPS53-204ENST00000437048 KCNA7Q96RP8 456 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 ZNF443Q9Y2A4 671 aaPredicted RBP6.63□□□□□ -1.35
VPS53-204ENST00000437048 LAMB2P55268 1798 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 HNRNPKP61978 463 aaKnown RBP eCLIP6.63□□□□□ -1.35
VPS53-204ENST00000437048 PDZD11Q5EBL8 140 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 OR13C9Q8NGT0 318 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 C10orf35Q96D05 121 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 POM121Q96HA1 1249 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 ACPTQ9BZG2 426 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 POFUT1Q9H488 388 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 ZAR1LA6NP61 321 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 GHRHP01286 108 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 OR10J1P30954 320 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 RPS25P62851 125 aaKnown RBP6.63□□□□□ -1.35
VPS53-204ENST00000437048 FBXL6Q8N531 539 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 SLC17A9Q9BYT1 436 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 IL17CQ9P0M4 197 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 SLC5A6Q9Y289 635 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 SIAH2O43255 324 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 G6PCP35575 357 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 ZNF140P52738 457 aaPredicted RBP6.63□□□□□ -1.35
VPS53-204ENST00000437048 CEBPEQ15744 281 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 PMCHL1Q16048 86 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 XKR7Q5GH72 579 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 TRNP1Q6NT89 227 aa6.63□□□□□ -1.35
VPS53-204ENST00000437048 NLRC3Q7RTR2 1065 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms