RNA–Protein interactions for RNA: ENST00000429035.1

SDC1-204, Transcript of syndecan 1, humanhuman

TSL 3

Gene SDC1, Length 646 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1-204ENST00000429035 LMO4P61968 165 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 MRPS11P82912 194 aaKnown RBP12.38□□□□□ -0.43
SDC1-204ENST00000429035 FMODQ06828 376 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 SGCAQ16586 387 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 LRRC23Q53EV4 343 aaPredicted RBP12.38□□□□□ -0.43
SDC1-204ENST00000429035 PABPC1L2AQ5JQF8 200 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 AKR7LQ8NHP1 331 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 MOSPD2Q8NHP6 518 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 ZNF426Q9BUY5 554 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 PCDHAC1Q9H158 963 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 NANOGQ9H9S0 305 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 CACNG2Q9Y698 323 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 ARHGAP32A7KAX9 2087 aa12.38□□□□□ -0.43
SDC1-204ENST00000429035 NBEAL1Q6ZS30 2694 aa12.37□□□□□ -0.43
SDC1-204ENST00000429035 PIP5K1CO60331 668 aa12.37□□□□□ -0.43
SDC1-204ENST00000429035 ANPEPP15144 967 aa12.37□□□□□ -0.43
SDC1-204ENST00000429035 ZNF32P17041 273 aa12.37□□□□□ -0.43
SDC1-204ENST00000429035 MAKP20794 623 aa12.37□□□□□ -0.43
SDC1-204ENST00000429035 ZNF81P51508 661 aa12.37□□□□□ -0.43
SDC1-204ENST00000429035 ERVK-25P63136 954 aa12.37□□□□□ -0.43
SDC1-204ENST00000429035 HFEQ30201 348 aa12.37□□□□□ -0.43
SDC1-204ENST00000429035 MMEL1Q495T6 779 aa12.37□□□□□ -0.43
SDC1-204ENST00000429035 RABL3Q5HYI8 236 aa12.37□□□□□ -0.43
SDC1-204ENST00000429035 ACSM5Q6NUN0 579 aa12.37□□□□□ -0.43
SDC1-204ENST00000429035 TMEM239Q8WW34 195 aa12.37□□□□□ -0.43
SDC1-204ENST00000429035 IPCEF1Q8WWN9 437 aaPredicted RBP12.37□□□□□ -0.43
SDC1-204ENST00000429035 TIMD4Q96H15 378 aa12.37□□□□□ -0.43
SDC1-204ENST00000429035 MAGEB18Q96M61 343 aa12.37□□□□□ -0.43
SDC1-204ENST00000429035 GAL3ST1Q99999 423 aa12.37□□□□□ -0.43
SDC1-204ENST00000429035 ECSITQ9BQ95 431 aa12.37□□□□□ -0.43
SDC1-204ENST00000429035 C20orf141Q9NUB4 165 aa12.37□□□□□ -0.43
SDC1-204ENST00000429035 STX18Q9P2W9 335 aaKnown RBP12.37□□□□□ -0.43
SDC1-204ENST00000429035 EIF3KQ9UBQ5 218 aaKnown RBP12.37□□□□□ -0.43
SDC1-204ENST00000429035 BAG5Q9UL15 447 aa12.37□□□□□ -0.43
SDC1-204ENST00000429035 MED31Q9Y3C7 131 aa12.37□□□□□ -0.43
SDC1-204ENST00000429035 WIPI2Q9Y4P8 454 aa12.37□□□□□ -0.43
SDC1-204ENST00000429035 A0A0A6YYJ9 748 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 IGKV1D-43A0A0B4J1Z2 117 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 A0A0G2JMP0 313 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 A0A0X1KG70 313 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 A0A1W2PPL8 197 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 PLSCR5A0PG75 271 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 C5orf49A4QMS7 147 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 MMP7P09237 267 aaPredicted RBP12.36□□□□□ -0.43
SDC1-204ENST00000429035 ADRA2CP18825 462 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 STOMP27105 288 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 CFPP27918 469 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 MPV17P39210 176 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 RBM34P42696 430 aaKnown RBP12.36□□□□□ -0.43
SDC1-204ENST00000429035 OR1E2P47887 323 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 GDI2P50395 445 aaKnown RBP12.36□□□□□ -0.43
SDC1-204ENST00000429035 CRYBA2P53672 197 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 SF3A3Q12874 501 aaKnown RBP eCLIP12.36□□□□□ -0.43
SDC1-204ENST00000429035 PIN1Q13526 163 aaPredicted RBP12.36□□□□□ -0.43
SDC1-204ENST00000429035 CYLC2Q14093 348 aaPredicted RBP12.36□□□□□ -0.43
SDC1-204ENST00000429035 MOGQ16653 247 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 ZNF718Q3SXZ3 478 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 IGFN1Q86VF2 1251 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 OR4M2Q8NGB6 313 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 ABHD4Q8TB40 342 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 SLC25A40Q8TBP6 338 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 HDAC2Q92769 488 aaKnown RBP12.36□□□□□ -0.43
SDC1-204ENST00000429035 ELMOD3Q96FG2 381 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 UBAP1Q9NZ09 502 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 RIMS3Q9UJD0 308 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 PCDHB10Q9UN67 800 aa12.36□□□□□ -0.43
SDC1-204ENST00000429035 FBP2O00757 339 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 PLPP2O43688 288 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 OR5F1O95221 314 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 IGHV2-5P01817 119 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 NR2C1P13056 603 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 CRYBB2P43320 205 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 TAF11Q15544 211 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 HIST3H3Q16695 136 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 NRN1LQ496H8 165 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 ALG10Q5BKT4 473 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 THEM4Q5T1C6 240 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 C10orf128Q5T292 105 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 DCAF12L2Q5VW00 463 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 NANOGP8Q6NSW7 305 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 RFPL4BQ6ZWI9 263 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 CCDC80Q76M96 950 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 MICU2Q8IYU8 434 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 ZNF101Q8IZC7 436 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 TEX29Q8N6K0 151 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 CPEB3Q8NE35 698 aaKnown RBP12.35□□□□□ -0.43
SDC1-204ENST00000429035 TSPEARQ8WU66 669 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 CCL17Q92583 94 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 RAB1CQ92928 201 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 TPD52L3Q96J77 140 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 MRPL13Q9BYD1 178 aaKnown RBP12.35□□□□□ -0.43
SDC1-204ENST00000429035 SIAEQ9HAT2 523 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 G6PC2Q9NQR9 355 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 NKIRAS2Q9NYR9 191 aa12.35□□□□□ -0.43
SDC1-204ENST00000429035 GMNCA6NCL1 334 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 CENPBD1B2RD01 187 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 HMGB1P1B2RPK0 211 aaPredicted RBP12.34□□□□□ -0.43
SDC1-204ENST00000429035 TRIM77I1YAP6 450 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 MRASO14807 208 aa12.34□□□□□ -0.43
SDC1-204ENST00000429035 EDF1O60869 148 aaKnown RBP12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 46.6 ms