RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 PAQR5Q9NXK6 330 aaPredicted RBP5.59□□□□□ -1.51
USP40-202ENST00000409945 C6orf203Q9P0P8 240 aaPredicted RBP5.59□□□□□ -1.51
USP40-202ENST00000409945 SLC6A5Q9Y345 797 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 EML6Q6ZMW3 1958 aa5.59□□□□□ -1.51
USP40-202ENST00000409945 ZNF407Q9C0G0 2248 aa5.59□□□□□ -1.52
USP40-202ENST00000409945 A0A1W2PQD3 144 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 FADS1O60427 444 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 SLC22A3O75751 556 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 KCNK2O95069 426 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 KRT75O95678 551 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 EPPINO95925 133 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 CPN1P15169 458 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 NCF2P19878 526 aaPredicted RBP5.58□□□□□ -1.52
USP40-202ENST00000409945 EFNA1P20827 205 aaPredicted RBP5.58□□□□□ -1.52
USP40-202ENST00000409945 GABRA5P31644 462 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 OPRM1P35372 400 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 TIMP3P35625 211 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 EIF1P41567 113 aaKnown RBP5.58□□□□□ -1.52
USP40-202ENST00000409945 NUP107P57740 925 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 SCARB2Q14108 478 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 BCL2A1Q16548 175 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 DUSP5Q16690 384 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 FAM174BQ3ZCQ3 159 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 EIPR1Q53HC9 387 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 DCST2Q5T1A1 773 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 OR5M10Q6IEU7 315 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 OR2A2Q6IF42 318 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 C6orf120Q7Z4R8 191 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 NET1Q7Z628 596 aaPredicted RBP5.58□□□□□ -1.52
USP40-202ENST00000409945 C1orf87Q8N0U7 546 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 ZNF614Q8N883 585 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 WDSUB1Q8N9V3 476 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 LILRB4Q8NHJ6 448 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 OR52E6Q96RD3 313 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 UGT2B28Q9BY64 529 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 PRRG4Q9BZD6 226 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 RAD21L1Q9H4I0 556 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 AIG1Q9NVV5 245 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 CHCHD3Q9NX63 227 aaKnown RBP5.58□□□□□ -1.52
USP40-202ENST00000409945 THUMPD1Q9NXG2 353 aaKnown RBP5.58□□□□□ -1.52
USP40-202ENST00000409945 SPRR3Q9UBC9 169 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 ZMAT5Q9UDW3 170 aaKnown RBP5.58□□□□□ -1.52
USP40-202ENST00000409945 ZNF629Q9UEG4 869 aaPredicted RBP5.58□□□□□ -1.52
USP40-202ENST00000409945 BTNL2Q9UIR0 455 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 RNF6Q9Y252 685 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 L3MBTL1Q9Y468 752 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 EXPH5Q8NEV8 1989 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 GJE1A6NN92 205 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 ZNF587BE7ETH6 402 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 OVOL3O00110 214 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 SDHDO14521 159 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 RFXANKO14593 260 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 STX11O75558 287 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 OXSR1O95747 527 aaPredicted RBP5.58□□□□□ -1.52
USP40-202ENST00000409945 ACP2P11117 423 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 HLA-DOBP13765 273 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 UQCRBP14927 111 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 ZNF17P17021 662 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 DCTP40126 519 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 MAGEA8P43361 318 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 HBA1P69905 142 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 SRYQ05066 204 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 CAMK2DQ13557 499 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 SGCBQ16585 318 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 ACSF3Q4G176 576 aaPredicted RBP5.58□□□□□ -1.52
USP40-202ENST00000409945 ZNF621Q6ZSS3 439 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 MSANTD1Q6ZTZ1 278 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 MARCH3Q86UD3 253 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 GRAMD2AQ8IUY3 354 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 ZNF619Q8N2I2 560 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 TMCO5AQ8N6Q1 288 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 OR2M3Q8NG83 312 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 OR5AK3PQ8NH89 298 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 NEUROG1Q92886 237 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 CDS1Q92903 461 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 ITCHQ96J02 903 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 SLC35A5Q9BS91 424 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 SEMA6AQ9H2E6 1030 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 ARMC7Q9H6L4 198 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 TIGARQ9NQ88 270 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 POLE3Q9NRF9 147 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 NDE1Q9NXR1 346 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 HAO2Q9NYQ3 351 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 CALML5Q9NZT1 146 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 MED11Q9P086 117 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 STX18Q9P2W9 335 aaKnown RBP5.58□□□□□ -1.52
USP40-202ENST00000409945 RHCGQ9UBD6 479 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 LAMP5Q9UJQ1 280 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 LIPT1Q9Y234 373 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 RPH3AQ9Y2J0 694 aaPredicted RBP5.58□□□□□ -1.52
USP40-202ENST00000409945 AP4B1Q9Y6B7 739 aa5.58□□□□□ -1.52
USP40-202ENST00000409945 UTP20O75691 2785 aaKnown RBP5.58□□□□□ -1.52
USP40-202ENST00000409945 GIMAP1-GIMAP5A0A087WTJ2 511 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 TMEM178BH3BS89 294 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 ZNHIT1O43257 154 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 ENTPD5O75356 428 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 NME6O75414 186 aaPredicted RBP5.57□□□□□ -1.52
USP40-202ENST00000409945 SYNGR4O95473 234 aa5.57□□□□□ -1.52
USP40-202ENST00000409945 PABPC4LP0CB38 370 aaKnown RBP5.57□□□□□ -1.52
USP40-202ENST00000409945 RNF224P0DH78 156 aa5.57□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms