RNA–Protein interactions for RNA: ENST00000399489.5

HMGB1-204, Transcript of high mobility group box 1, humanhuman

TSL 1 (best) BASIC

Gene HMGB1, Length 1,727 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-204ENST00000399489 DCST2Q5T1A1 773 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 OR5M10Q6IEU7 315 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 OR8G2PQ6IF36 304 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 C8orf82Q6P1X6 216 aaPredicted RBP3.43□□□□□ -1.86
HMGB1-204ENST00000399489 EMBQ6PCB8 327 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 FAM199XQ6PEV8 388 aaPredicted RBP3.43□□□□□ -1.86
HMGB1-204ENST00000399489 AHSA2Q719I0 299 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 PRSS48Q7RTY5 328 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 C16orf82Q7Z2V1 217 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 UNC93AQ86WB7 457 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 IFNEQ86WN2 208 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 MDS2Q8NDY4 140 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 ZNF738Q8NE65 137 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 OR5B3Q8NH48 314 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 PHF10Q8WUB8 498 aaKnown RBP3.43□□□□□ -1.86
HMGB1-204ENST00000399489 OR8D1Q8WZ84 308 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 MRPS31Q92665 395 aaKnown RBP3.43□□□□□ -1.86
HMGB1-204ENST00000399489 NTAN1Q96AB6 310 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 RNF145Q96MT1 663 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 SERPINB12Q96P63 405 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 OR5B2Q96R09 309 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 RHNO1Q9BSD3 238 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 TIMM29Q9BSF4 260 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 ZNF426Q9BUY5 554 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 CALN1Q9BXU9 219 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 ELOVL4Q9GZR5 314 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 REEP4Q9H6H4 257 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 PLEKHA1Q9HB21 404 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 ACP6Q9NPH0 428 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 ICAM5Q9UMF0 924 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 UBQLN1Q9UMX0 589 aaKnown RBP3.43□□□□□ -1.86
HMGB1-204ENST00000399489 GINS2Q9Y248 185 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 CAMSAP1Q5T5Y3 1602 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 TRIP12Q14669 1992 aaPredicted RBP3.43□□□□□ -1.86
HMGB1-204ENST00000399489 PLCH2O75038 1416 aa3.43□□□□□ -1.86
HMGB1-204ENST00000399489 PRXQ9BXM0 1461 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 AGLP35573 1532 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 REREQ9P2R6 1566 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 IGLV5-52A0A0A0MRZ9 124 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 OR5B21A6NL26 309 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 PP2D1A8MPX8 630 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 INAFM1C9JVW0 142 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 SGCEO43556 437 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 TNFAIP8O95379 198 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 SEC24AO95486 1093 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 PMS2P2O95744 297 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 TIMP1P01033 207 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 LGALS2P05162 132 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 PET100P0DJ07 73 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 CDH1P12830 882 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 RNH1P13489 461 aaKnown RBP3.42□□□□□ -1.86
HMGB1-204ENST00000399489 DTYMKP23919 212 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 MAS1LP35410 378 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 SOX3P41225 446 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 DNASE1L1P49184 302 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 XKP51811 444 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 MED21Q13503 144 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 OR5I1Q13606 314 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 SF3A2Q15428 464 aaKnown RBP3.42□□□□□ -1.86
HMGB1-204ENST00000399489 KRTAP27-1Q3LI81 207 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 SIRPB2Q5JXA9 342 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 ZNF530Q6P9A1 599 aaPredicted RBP3.42□□□□□ -1.86
HMGB1-204ENST00000399489 CEACAM19Q7Z692 300 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 ISCA2Q86U28 154 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 CLVS1Q8IUQ0 354 aaPredicted RBP3.42□□□□□ -1.86
HMGB1-204ENST00000399489 KIF2BQ8N4N8 673 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 SREK1IP1Q8N9Q2 155 aaPredicted RBP3.42□□□□□ -1.86
HMGB1-204ENST00000399489 ZNF114Q8NC26 417 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 OR2T33Q8NG76 320 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 OR8K1Q8NGG5 319 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 OR2L2Q8NH16 312 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 GTF3AQ92664 365 aaKnown RBP3.42□□□□□ -1.86
HMGB1-204ENST00000399489 RORBQ92753 470 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 PSMG2Q969U7 264 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 RAB3CQ96E17 227 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 CCDC42Q96M95 316 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 PACRGQ96M98 296 aaPredicted RBP3.42□□□□□ -1.86
HMGB1-204ENST00000399489 EPYCQ99645 322 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 NICN1Q9BSH3 213 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 DCUN1D5Q9BTE7 237 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 FAIM2Q9BWQ8 316 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 RBKSQ9H477 322 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 PLEKHA3Q9HB20 300 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 NMUR1Q9HB89 426 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 PARVAQ9NVD7 372 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 C1orf109Q9NX04 203 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 TAS2R9Q9NYW1 312 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 TMCO1Q9UM00 188 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 ERVW-1Q9UQF0 538 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 VDAC3Q9Y277 283 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 KDM5CP41229 1560 aa3.42□□□□□ -1.86
HMGB1-204ENST00000399489 A0A1B0GTH9 108 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 EFCAB10A6NFE3 127 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 SAGE2PA6NJ88 616 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 SYCE1LA8MT33 242 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 TMEM238C9JI98 176 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 NEDD8-MDP1E9PL57 170 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 K7ERI5 159 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 DCTN6O00399 190 aa3.41□□□□□ -1.86
HMGB1-204ENST00000399489 SLC9A3R1O14745 358 aaPredicted RBP3.41□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 31.1 ms