RNA–Protein interactions for RNA: ENST00000396595.7

LIMCH1-203, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,740 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-203ENST00000396595 DHRS11Q6UWP2 260 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 TMUB2Q71RG4 321 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 ZNF511Q8NB15 262 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 NAT6Q93015 286 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 LCORQ96JN0 433 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 LMAN1LQ9HAT1 526 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 C12orf10Q9HB07 376 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 SLC35D1Q9NTN3 355 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 ACER3Q9NUN7 267 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 PLSCR5A0PG75 271 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 CBX7O95931 251 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 CA3P07451 260 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 CALCBP10092 127 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 OMGP23515 440 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 PTAFRP25105 342 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 ZNF93P35789 620 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 HSD17B7P56937 341 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 SLC35A1P78382 337 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 NR0B2Q15466 257 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 CTU2Q2VPK5 515 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 SLC36A2Q495M3 483 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 HEPHL1Q6MZM0 1159 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 ADGRF3Q8IZF5 1079 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 DUSP23Q9BVJ7 150 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 NKX2-4Q9H2Z4 354 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 SLC2A8Q9NY64 477 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 OR52A1Q9UKL2 312 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 PPT2Q9UMR5 302 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 TMEM221A6NGB7 291 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 M0QYG6 137 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 MRPL33O75394 65 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 KLKB1P03952 638 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 THBS1P07996 1170 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 SCGB1C2P0DMR2 95 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 TRHRP34981 398 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 GLYATL3Q5SZD4 288 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 OR2T2Q6IF00 324 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 PDXPQ96GD0 296 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 ARHGDIGQ99819 225 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 PIGQQ9BRB3 760 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 SLC39A9Q9NUM3 307 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 CYB5R1Q9UHQ9 305 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 BOKQ9UMX3 212 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 C2orf72A6NCS6 295 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 OR6C68A6NDL8 312 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 P2RY10O00398 339 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 UTS2O95399 124 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 LGI1O95970 557 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 CD38P28907 300 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 DEFB103AP81534 67 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 C17orf67Q0P5P2 114 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 RABEPKQ7Z6M1 372 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 COMMD1Q8N668 190 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 UBAC2Q8NBM4 344 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 DDOQ99489 341 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 SGPP1Q9BX95 441 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 PRO1933Q9H354 126 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 LRIT1Q9P2V4 623 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 MMACHCQ9Y4U1 282 aa9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 MYH9P35579 1960 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-203ENST00000396595 A0A087WUU8 490 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 NSG1A0A0A6YYJ2 146 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 M0QZK8 103 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 GGCTO75223 188 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 CLDN17P56750 224 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 TPPP2P59282 170 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 MRPS21P82921 87 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 ATPAF1Q5TC12 328 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 ETV3LQ6ZN32 361 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 SYT9Q86SS6 491 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 LFNGQ8NES3 379 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 DYNC2LI1Q8TCX1 351 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 SECTM1Q8WVN6 248 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 CMTM3Q96MX0 182 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 STACQ99469 402 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 CTRCQ99895 268 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 ISYNA1Q9NPH2 558 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 NDUFB11Q9NX14 153 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 SLC31A2O15432 143 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 CYB5BO43169 146 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 RPLP1P05386 114 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 NTF3P20783 257 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 GJA4P35212 333 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 F2RL1P55085 397 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 TOR2AQ5JU69 321 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 ZNF836Q6ZNA1 936 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 GDPD3Q7L5L3 318 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 LSMEM1Q8N8F7 131 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 TMEM184BQ9Y519 407 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 GATCO43716 136 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 F11P03951 625 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 FOLR1P15328 257 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 CPEP16870 476 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 IKZF1Q13422 519 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 OR52W1Q6IF63 320 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 AAED1Q7RTV5 226 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 TMEFF1Q8IYR6 380 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 LGI3Q8N145 548 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 SLC16A11Q8NCK7 471 aa9.43□□□□□ -0.9
LIMCH1-203ENST00000396595 DVL3Q92997 716 aaPredicted RBP9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms