RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 MYPOPQ86VE0 399 aaPredicted RBP18.87■□□□□ 0.61
CLN3-207ENST00000395653 OR52L1Q8NGH7 329 aa18.87■□□□□ 0.61
CLN3-207ENST00000395653 SMAP2Q8WU79 429 aaPredicted RBP18.87■□□□□ 0.61
CLN3-207ENST00000395653 HTRA1Q92743 480 aa18.87■□□□□ 0.61
CLN3-207ENST00000395653 NABP1Q96AH0 204 aa18.87■□□□□ 0.61
CLN3-207ENST00000395653 IFT27Q9BW83 186 aa18.87■□□□□ 0.61
CLN3-207ENST00000395653 CXXC4Q9H2H0 198 aa18.87■□□□□ 0.61
CLN3-207ENST00000395653 SEC61A2Q9H9S3 476 aa18.87■□□□□ 0.61
CLN3-207ENST00000395653 FAIMQ9NVQ4 179 aa18.87■□□□□ 0.61
CLN3-207ENST00000395653 IDH3BO43837 385 aa18.86■□□□□ 0.61
CLN3-207ENST00000395653 ZNF14P17017 642 aaPredicted RBP18.86■□□□□ 0.61
CLN3-207ENST00000395653 CDAP32320 146 aa18.86■□□□□ 0.61
CLN3-207ENST00000395653 PTDSS1P48651 473 aaKnown RBP18.86■□□□□ 0.61
CLN3-207ENST00000395653 TESK1Q15569 626 aa18.86■□□□□ 0.61
CLN3-207ENST00000395653 PGGHGQ32M88 737 aa18.86■□□□□ 0.61
CLN3-207ENST00000395653 FGFBP3Q8TAT2 258 aa18.86■□□□□ 0.61
CLN3-207ENST00000395653 TMEM171Q8WVE6 324 aa18.86■□□□□ 0.61
CLN3-207ENST00000395653 UTP4Q969X6 686 aaKnown RBP18.86■□□□□ 0.61
CLN3-207ENST00000395653 GTPBP3Q969Y2 492 aaKnown RBP18.86■□□□□ 0.61
CLN3-207ENST00000395653 DHRS9Q9BPW9 319 aa18.86■□□□□ 0.61
CLN3-207ENST00000395653 SYT4Q9H2B2 425 aa18.86■□□□□ 0.61
CLN3-207ENST00000395653 EGLN3Q9H6Z9 239 aa18.86■□□□□ 0.61
CLN3-207ENST00000395653 ATP23Q9Y6H3 246 aa18.86■□□□□ 0.61
CLN3-207ENST00000395653 E2F6O75461 281 aa18.85■□□□□ 0.61
CLN3-207ENST00000395653 GUCA1AP43080 201 aaPredicted RBP18.85■□□□□ 0.61
CLN3-207ENST00000395653 FAM27BQ5VT28 67 aa18.85■□□□□ 0.61
CLN3-207ENST00000395653 ZNF544Q6NX49 715 aa18.85■□□□□ 0.61
CLN3-207ENST00000395653 TMEM53Q6P2H8 277 aa18.85■□□□□ 0.61
CLN3-207ENST00000395653 CD300LDQ6UXZ3 194 aa18.85■□□□□ 0.61
CLN3-207ENST00000395653 PTCHD4Q6ZW05 846 aa18.85■□□□□ 0.61
CLN3-207ENST00000395653 TMEM179BQ7Z7N9 219 aa18.85■□□□□ 0.61
CLN3-207ENST00000395653 DUS3LQ96G46 650 aaKnown RBP18.85■□□□□ 0.61
CLN3-207ENST00000395653 SNX18Q96RF0 628 aa18.85■□□□□ 0.61
CLN3-207ENST00000395653 KCNN2Q9H2S1 579 aa18.85■□□□□ 0.61
CLN3-207ENST00000395653 LAMP3Q9UQV4 416 aa18.85■□□□□ 0.61
CLN3-207ENST00000395653 PLCE1Q9P212 2302 aa18.85■□□□□ 0.61
CLN3-207ENST00000395653 AKAP9Q99996 3911 aa18.85■□□□□ 0.61
CLN3-207ENST00000395653 DSCAMO60469 2012 aa18.84■□□□□ 0.61
CLN3-207ENST00000395653 IGHV2OR16-5A0A0B4J2B6 119 aa18.84■□□□□ 0.61
CLN3-207ENST00000395653 DEAF1O75398 565 aaPredicted RBP18.84■□□□□ 0.61
CLN3-207ENST00000395653 SOD3P08294 240 aa18.84■□□□□ 0.61
CLN3-207ENST00000395653 PATE4P0C8F1 98 aa18.84■□□□□ 0.61
CLN3-207ENST00000395653 CTLA4P16410 223 aa18.84■□□□□ 0.61
CLN3-207ENST00000395653 NOS3P29474 1203 aa18.84■□□□□ 0.61
CLN3-207ENST00000395653 CALCRP30988 508 aa18.84■□□□□ 0.61
CLN3-207ENST00000395653 CDKN2AP42771 156 aaKnown RBP18.84■□□□□ 0.61
CLN3-207ENST00000395653 COX10Q12887 443 aa18.84■□□□□ 0.61
CLN3-207ENST00000395653 CCNIQ14094 377 aa18.84■□□□□ 0.61
CLN3-207ENST00000395653 SGCAQ16586 387 aa18.84■□□□□ 0.61
CLN3-207ENST00000395653 DTX2Q86UW9 622 aa18.84■□□□□ 0.61
CLN3-207ENST00000395653 LRRC18Q8N456 261 aa18.84■□□□□ 0.61
CLN3-207ENST00000395653 OR4F15Q8NGB8 312 aa18.84■□□□□ 0.61
CLN3-207ENST00000395653 MS4A3Q96HJ5 214 aa18.84■□□□□ 0.61
CLN3-207ENST00000395653 FEVQ99581 238 aa18.84■□□□□ 0.61
CLN3-207ENST00000395653 PLA2G12AQ9BZM1 189 aa18.84■□□□□ 0.61
CLN3-207ENST00000395653 GRIP2Q9C0E4 1043 aa18.84■□□□□ 0.61
CLN3-207ENST00000395653 RNF121Q9H920 327 aa18.84■□□□□ 0.61
CLN3-207ENST00000395653 ARMC1Q9NVT9 282 aa18.84■□□□□ 0.61
CLN3-207ENST00000395653 PDP1Q9P0J1 537 aaPredicted RBP18.84■□□□□ 0.61
CLN3-207ENST00000395653 A0A1W2PPL8 197 aa18.83■□□□□ 0.61
CLN3-207ENST00000395653 BHLHE40O14503 412 aa18.83■□□□□ 0.61
CLN3-207ENST00000395653 TIPRLO75663 272 aa18.83■□□□□ 0.61
CLN3-207ENST00000395653 SERPINA5P05154 406 aa18.83■□□□□ 0.61
CLN3-207ENST00000395653 MMP7P09237 267 aaPredicted RBP18.83■□□□□ 0.61
CLN3-207ENST00000395653 HIST1H1CP16403 213 aaKnown RBP18.83■□□□□ 0.61
CLN3-207ENST00000395653 TTKP33981 857 aa18.83■□□□□ 0.61
CLN3-207ENST00000395653 CLEC12AQ5QGZ9 265 aa18.83■□□□□ 0.61
CLN3-207ENST00000395653 JAZF1Q86VZ6 243 aa18.83■□□□□ 0.61
CLN3-207ENST00000395653 LRRC75A-AS1Q8N1F1 130 aa18.83■□□□□ 0.61
CLN3-207ENST00000395653 OR8D4Q8NGM9 314 aa18.83■□□□□ 0.61
CLN3-207ENST00000395653 NIPSNAP1Q9BPW8 284 aa18.83■□□□□ 0.61
CLN3-207ENST00000395653 CXorf56Q9H5V9 222 aa18.83■□□□□ 0.61
CLN3-207ENST00000395653 POLE4Q9NR33 117 aa18.83■□□□□ 0.61
CLN3-207ENST00000395653 ZKSCAN7Q9P0L1 754 aaPredicted RBP18.83■□□□□ 0.61
CLN3-207ENST00000395653 HEATR1Q9H583 2144 aaKnown RBP18.83■□□□□ 0.6
CLN3-207ENST00000395653 SLC16A7O60669 478 aa18.83■□□□□ 0.6
CLN3-207ENST00000395653 SMPD2O60906 423 aa18.83■□□□□ 0.6
CLN3-207ENST00000395653 KHDRBS3O75525 346 aaKnown RBP18.83■□□□□ 0.6
CLN3-207ENST00000395653 MSR1P21757 451 aa18.83■□□□□ 0.6
CLN3-207ENST00000395653 LAP3P28838 519 aa18.83■□□□□ 0.6
CLN3-207ENST00000395653 ARHGDIAP52565 204 aa18.83■□□□□ 0.6
CLN3-207ENST00000395653 RAB39AQ14964 217 aa18.83■□□□□ 0.6
CLN3-207ENST00000395653 ETFDHQ16134 617 aa18.83■□□□□ 0.6
CLN3-207ENST00000395653 AGAP6Q5VW22 663 aa18.83■□□□□ 0.6
CLN3-207ENST00000395653 DNM1P34Q6PK57 102 aa18.83■□□□□ 0.6
CLN3-207ENST00000395653 ZNF584Q8IVC4 421 aa18.83■□□□□ 0.6
CLN3-207ENST00000395653 NUP37Q8NFH4 326 aa18.83■□□□□ 0.6
CLN3-207ENST00000395653 OR4K13Q8NH42 304 aa18.83■□□□□ 0.6
CLN3-207ENST00000395653 NRBF2Q96F24 287 aa18.83■□□□□ 0.6
CLN3-207ENST00000395653 TRAF4Q9BUZ4 470 aaPredicted RBP18.83■□□□□ 0.6
CLN3-207ENST00000395653 NUAK2Q9H093 628 aa18.83■□□□□ 0.6
CLN3-207ENST00000395653 C1orf198Q9H425 327 aa18.83■□□□□ 0.6
CLN3-207ENST00000395653 NTN4Q9HB63 628 aa18.83■□□□□ 0.6
CLN3-207ENST00000395653 TBC1D23Q9NUY8 699 aa18.83■□□□□ 0.6
CLN3-207ENST00000395653 AP4S1Q9Y587 144 aa18.83■□□□□ 0.6
CLN3-207ENST00000395653 RENP00797 406 aa18.82■□□□□ 0.6
CLN3-207ENST00000395653 TP53P04637 393 aaPredicted RBP18.82■□□□□ 0.6
CLN3-207ENST00000395653 CST2P09228 141 aa18.82■□□□□ 0.6
CLN3-207ENST00000395653 PAX1P15863 534 aa18.82■□□□□ 0.6
CLN3-207ENST00000395653 CRABP1P29762 137 aa18.82■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 51.8 ms