RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 SELENOVP59797 346 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 APOOLQ6UXV4 268 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 KLBQ86Z14 1044 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 Q8N402 240 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 CLDN22Q8N7P3 220 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 CHST4Q8NCG5 386 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 BARHL1Q9BZE3 327 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 HRH3Q9Y5N1 445 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 KLF7O75840 302 aaPredicted RBP9.29□□□□□ -0.92
COL6A3-205ENST00000392004 CRYABP02511 175 aaKnown RBP9.29□□□□□ -0.92
COL6A3-205ENST00000392004 CELA3AP09093 270 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 TDGF1P13385 188 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 TGM4P49221 684 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 AP2S1P53680 142 aaPredicted RBP9.29□□□□□ -0.92
COL6A3-205ENST00000392004 PRPS1P60891 318 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 RAB14P61106 215 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 HEPHL1Q6MZM0 1159 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 OR10D3Q8NH80 312 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 B3GNT2Q9NY97 397 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 ABCA1O95477 2261 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 NAV3Q8IVL0 2385 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 INMT-MINDY4F8WBC2 141 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 CHP2O43745 196 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 CD82P27701 267 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 ACKR1Q16570 336 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 ARHGAP11AQ6P4F7 1023 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 MZT2AQ6P582 158 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 H1FNTQ75WM6 255 aaPredicted RBP9.29□□□□□ -0.92
COL6A3-205ENST00000392004 C17orf82Q86X59 251 aaPredicted RBP9.29□□□□□ -0.92
COL6A3-205ENST00000392004 ABHD3Q8WU67 409 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 AKAP1Q92667 903 aaKnown RBP eCLIP9.29□□□□□ -0.92
COL6A3-205ENST00000392004 MCUBQ9NWR8 336 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 EMC3Q9P0I2 261 aa9.29□□□□□ -0.92
COL6A3-205ENST00000392004 TNRC18O15417 2968 aaPredicted RBP9.29□□□□□ -0.92
COL6A3-205ENST00000392004 SOCS6O14544 535 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 LYZL6O75951 148 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 OR7A10O76100 309 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 ZNF20P17024 532 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 CDAP32320 146 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 MAP3K8P41279 467 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 POU3F4P49335 361 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 GBX2P52951 348 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-205ENST00000392004 MLF1P58340 268 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 PPP3R1P63098 170 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 GLO1Q04760 184 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 TSC22D1Q15714 1073 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 MEP1BQ16820 701 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 ZNF658BQ4V348 819 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-205ENST00000392004 FGD2Q7Z6J4 655 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 IZUMO1Q8IYV9 350 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 OR8J1Q8NGP2 316 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 M1APQ8TC57 530 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 MED28Q9H204 178 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 CLEC4MQ9H2X3 399 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-205ENST00000392004 ACER3Q9NUN7 267 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 CLEC2DQ9UHP7 191 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 NUP50Q9UKX7 468 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 RBM7Q9Y580 266 aaKnown RBP9.28□□□□□ -0.92
COL6A3-205ENST00000392004 PKD1L2Q7Z442 2459 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 SCN8AQ9UQD0 1980 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 TMEM72A0PK05 275 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 LYRM1O43325 122 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 RFPL3SP0C7P2 107 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 SMIM10L1P0DMW3 83 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 B4GALT1P15291 398 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 MTNR1AP48039 350 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 RPL18Q07020 188 aaKnown RBP9.28□□□□□ -0.92
COL6A3-205ENST00000392004 SEC23BQ15437 767 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 FCRLAQ7L513 359 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 GLB1L2Q8IW92 636 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 APCDD1LQ8NCL9 501 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 OR2M7Q8NG81 312 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 OR5J2Q8NH18 312 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 NUBPLQ8TB37 319 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 CPT1CQ8TCG5 803 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 SLC25A46Q96AG3 418 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 SMIM10Q96HG1 83 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 LAT2Q9GZY6 243 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 COMMD4Q9H0A8 199 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 C12orf4Q9NQ89 552 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 RBFOX1Q9NWB1 397 aaKnown RBP9.28□□□□□ -0.92
COL6A3-205ENST00000392004 ZNF222Q9UK12 451 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 CDH10Q9Y6N8 788 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 A0A0G2JMM0 328 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 A0A0G2JMP0 313 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 A0A1W2PPB8 328 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 A0A1W2PRS3 328 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 PCP4L1A6NKN8 68 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 KIR3DP1A8MWS1 328 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 CCL21O00585 134 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 RAB36O95755 333 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 GPANK1O95872 356 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 RECKO95980 971 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 ITGA5P08648 1049 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 CLEC2LP0C7M8 214 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 PIPP12273 146 aaPredicted RBP9.28□□□□□ -0.92
COL6A3-205ENST00000392004 GABRB1P18505 474 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 TBXA2RP21731 343 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 MSX1P28360 303 aa9.28□□□□□ -0.92
COL6A3-205ENST00000392004 EIF2B1Q14232 305 aaKnown RBP9.28□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms