RNA–Protein interactions for RNA: ENST00000389856.9

CCDC88C-203, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,641 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-203ENST00000389856 ZNF552Q9H707 407 aaPredicted RBP16.27■□□□□ 0.2
CCDC88C-203ENST00000389856 MOV10Q9HCE1 1003 aaKnown RBP16.27■□□□□ 0.2
CCDC88C-203ENST00000389856 COMMD3Q9UBI1 195 aa16.27■□□□□ 0.2
CCDC88C-203ENST00000389856 CEP250Q9BV73 2442 aa16.27■□□□□ 0.2
CCDC88C-203ENST00000389856 SLC22A23A1A5C7 686 aa16.27■□□□□ 0.19
CCDC88C-203ENST00000389856 CD8B2A6NJW9 211 aa16.27■□□□□ 0.19
CCDC88C-203ENST00000389856 OGG1O15527 345 aa16.27■□□□□ 0.19
CCDC88C-203ENST00000389856 CD8BP10966 210 aa16.27■□□□□ 0.19
CCDC88C-203ENST00000389856 PYCR1P32322 319 aa16.27■□□□□ 0.19
CCDC88C-203ENST00000389856 MEOX1P50221 254 aa16.27■□□□□ 0.19
CCDC88C-203ENST00000389856 GBX2P52951 348 aaPredicted RBP16.27■□□□□ 0.19
CCDC88C-203ENST00000389856 TPTEP56180 551 aa16.27■□□□□ 0.19
CCDC88C-203ENST00000389856 RAC3P60763 192 aa16.27■□□□□ 0.19
CCDC88C-203ENST00000389856 ZNF766Q5HY98 468 aa16.27■□□□□ 0.19
CCDC88C-203ENST00000389856 MZT2BQ6NZ67 158 aa16.27■□□□□ 0.19
CCDC88C-203ENST00000389856 CNIH2Q6PI25 160 aa16.27■□□□□ 0.19
CCDC88C-203ENST00000389856 NRARPQ7Z6K4 114 aa16.27■□□□□ 0.19
CCDC88C-203ENST00000389856 UBQLNLQ8IYU4 475 aa16.27■□□□□ 0.19
CCDC88C-203ENST00000389856 OR51L1Q8NGJ5 315 aa16.27■□□□□ 0.19
CCDC88C-203ENST00000389856 ZPLD1Q8TCW7 415 aa16.27■□□□□ 0.19
CCDC88C-203ENST00000389856 SCMH1Q96GD3 660 aa16.27■□□□□ 0.19
CCDC88C-203ENST00000389856 RBP7Q96R05 134 aa16.27■□□□□ 0.19
CCDC88C-203ENST00000389856 TTTY12Q9BZ98 90 aa16.27■□□□□ 0.19
CCDC88C-203ENST00000389856 TRAV1-2A0A0B4J238 106 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 ZNF726A6NNF4 738 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 SC5DO75845 299 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 GATBO75879 557 aaKnown RBP16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 IGHG1P01857 330 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 OPN1LWP04000 364 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 RFPL3SP0C7P2 107 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 SHC1P29353 583 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 RFX2P48378 723 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 AGFG1P52594 562 aaKnown RBP16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 GLO1Q04760 184 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 MRPL28Q13084 256 aaKnown RBP16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 MELKQ14680 651 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 POU4F3Q15319 338 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 DEFB109BQ30KR1 87 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 CDONQ4KMG0 1287 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 ZMAT1Q5H9K5 638 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 WIPI1Q5MNZ9 446 aaPredicted RBP16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 LINC01590Q5TEZ4 76 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 TRIQKQ629K1 86 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 GALNTL5Q7Z4T8 443 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 GPAT4Q86UL3 456 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 OR6V1Q8N148 313 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 ABHD4Q8TB40 342 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 RELTQ969Z4 430 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 ZC3HAV1LQ96H79 300 aaKnown RBP16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 C4orf36Q96KX1 117 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 INTS14Q96SY0 518 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 TBX5Q99593 518 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 KLK13Q9UKR3 277 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 B9D1Q9UPM9 204 aa16.26■□□□□ 0.19
CCDC88C-203ENST00000389856 PINLYPA6NC86 204 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 H7C1C5 153 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 J3QLW9 94 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 KLK10O43240 276 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 GPRIN2O60269 458 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 SLC16A7O60669 478 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 ZNF19P17023 458 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 AZGP1P25311 298 aaKnown RBP16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 NAA10P41227 235 aaPredicted RBP16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 LCN6P62502 163 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 H3F3AP84243 136 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 HACD4Q5VWC8 232 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 ARL9Q6T311 187 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 IGFL2Q6UWQ7 119 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 KCTD20Q7Z5Y7 419 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 LRRC28Q86X40 367 aaPredicted RBP16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 RDH10Q8IZV5 341 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 KDM8Q8N371 416 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 C19orf18Q8NEA5 215 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 OR6X1Q8NH79 312 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 OR2V1Q8NHB1 315 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 SNX33Q8WV41 574 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 DCLRE1CQ96SD1 692 aaKnown RBP16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 SF3B5Q9BWJ5 86 aaKnown RBP16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 B3GAT1Q9P2W7 334 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 RABL2AQ9UBK7 228 aaPredicted RBP16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 ZMIZ1Q9ULJ6 1067 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 RABL2BQ9UNT1 228 aa16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 SIRT4Q9Y6E7 314 aaPredicted RBP16.25■□□□□ 0.19
CCDC88C-203ENST00000389856 NPIPA2E9PIF3 369 aa16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 NPIPA3F8WFD2 350 aa16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 EIF1AYO14602 144 aaKnown RBP16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 KHDRBS3O75525 346 aaKnown RBP16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 ARL6IP5O75915 188 aa16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 GLSO94925 669 aaPredicted RBP16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 HLA-DQA2P01906 255 aa16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 TACSTD2P09758 323 aa16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 SLC2A2P11168 524 aaPredicted RBP16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 HLA-DOBP13765 273 aa16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 ENPP1P22413 925 aa16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 TNFSF10P50591 281 aa16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 P2RY4P51582 365 aa16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 BIDP55957 195 aa16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 CARD18P57730 90 aa16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 CLRN1P58418 232 aa16.24■□□□□ 0.19
CCDC88C-203ENST00000389856 THEM4Q5T1C6 240 aa16.24■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 52.6 ms