RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 HAVCR1Q96D42 359 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 OR6C1Q96RD1 312 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 TGIF2Q9GZN2 237 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 WNT16Q9UBV4 365 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 SUSD2Q9UGT4 822 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 FBXL3Q9UKT7 428 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 HSPB11Q9Y547 144 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 TSPAN9O75954 239 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 SPARCP09486 303 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 H2AFB2P0C5Z0 115 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 DYRK1AQ13627 763 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 Q6ZTK2 550 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 HGDQ93099 445 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 MIB2Q96AX9 1013 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 CLDN23Q96B33 292 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 C20orf85Q9H1P6 137 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 COA3Q9Y2R0 106 aaPredicted RBP12.02□□□□□ -0.49
CCDC3-202ENST00000378839 FKBP7Q9Y680 259 aa12.02□□□□□ -0.49
CCDC3-202ENST00000378839 IGLV3-12A0A075B6K2 115 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 G3V3Q6 166 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 XKRYO14609 159 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 ITGA5P08648 1049 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 FOSL2P15408 326 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 TEX30Q5JUR7 227 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 PHF21AQ96BD5 680 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 APMAPQ9HDC9 416 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 SLC23A1Q9UHI7 598 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 VDAC3Q9Y277 283 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 FREM3P0C091 2139 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 ASCC3Q8N3C0 2202 aaKnown RBP12.01□□□□□ -0.49
CCDC3-202ENST00000378839 CPED1A4D0V7 1026 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 TMEM212A6NML5 194 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 GABARAPH6UMI1 98 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 DHFRP00374 187 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 CALCBP10092 127 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 TAS2R20P59543 309 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 CCL7P80098 99 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 TMEM69Q5SWH9 247 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 OR7E24Q6IFN5 339 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 TMEM71Q6P5X7 295 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 SEZ6L2Q6UXD5 910 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 KMT5CQ86Y97 462 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 GRPEL2Q8TAA5 225 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 ABHD6Q9BV23 337 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 ZNF222Q9UK12 451 aa12.01□□□□□ -0.49
CCDC3-202ENST00000378839 A0A1B0GTQ1 180 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 CENPBD1B2RD01 187 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 CDK2AP1O14519 115 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 GPR171O14626 319 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 NUPL2O15504 423 aaKnown RBP12□□□□□ -0.49
CCDC3-202ENST00000378839 LMX1BO60663 402 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 SRSF10O75494 262 aaKnown RBP12□□□□□ -0.49
CCDC3-202ENST00000378839 IGHMP01871 453 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 ADAM8P78325 824 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 NKAIN1Q4KMZ8 207 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 BAIAP2L2Q6UXY1 529 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 SPERTQ8NA61 448 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 OR51D1Q8NGF3 324 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 WDR89Q96FK6 387 aaPredicted RBP12□□□□□ -0.49
CCDC3-202ENST00000378839 OR10A4Q9H209 315 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 KDM4BO94953 1096 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 OPN1LWP04000 364 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 STOMP27105 288 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 OR3A3P47888 321 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 VEGFCP49767 419 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 SELENOPP49908 381 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 CSRP2Q16527 193 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 FDX2Q6P4F2 183 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 DNM1P46Q6ZS02 220 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 ZNF679Q8IYX0 411 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 GPR148Q8TDV2 347 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 RNF128Q8TEB7 428 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 S100A16Q96FQ6 103 aaKnown RBP12□□□□□ -0.49
CCDC3-202ENST00000378839 MED29Q9NX70 200 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 MRPL39Q9NYK5 338 aaKnown RBP12□□□□□ -0.49
CCDC3-202ENST00000378839 LRP12Q9Y561 859 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 CIB4A0PJX0 185 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 ANKRD20A5PA0PJZ0 165 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 IFNGR1P15260 489 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 PTGDSP41222 190 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 CXCL12P48061 93 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 ART1P52961 327 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 OR7A5Q15622 319 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 HYAL4Q2M3T9 481 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 ZNF385CQ66K41 422 aaPredicted RBP12□□□□□ -0.49
CCDC3-202ENST00000378839 PLCZ1Q86YW0 608 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 OR2M2Q96R28 347 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 KLHL9Q9P2J3 617 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 PCDHGA5Q9Y5G8 931 aa12□□□□□ -0.49
CCDC3-202ENST00000378839 IGHV5-10-1A0A0J9YXX1 117 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 KRT33AO76009 404 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 SULT1A3P0DMM9 295 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 SULT1A4P0DMN0 295 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 CCKBRP32239 447 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 GUCA2AQ02747 115 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 ROM1Q03395 351 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 FOXF1Q12946 379 aa11.99□□□□□ -0.49
CCDC3-202ENST00000378839 EIF2B1Q14232 305 aaKnown RBP11.99□□□□□ -0.49
CCDC3-202ENST00000378839 YOD1Q5VVQ6 348 aaPredicted RBP11.99□□□□□ -0.49
CCDC3-202ENST00000378839 SLC22A10Q63ZE4 541 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms