RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 CD1AP06126 327 aa12.27□□□□□ -0.45
PTPRF-202ENST00000372405 SP1P08047 785 aa12.27□□□□□ -0.45
PTPRF-202ENST00000372405 NME2P22392 152 aa12.27□□□□□ -0.45
PTPRF-202ENST00000372405 RRADP55042 308 aa12.27□□□□□ -0.45
PTPRF-202ENST00000372405 SLC17A1Q14916 467 aa12.27□□□□□ -0.45
PTPRF-202ENST00000372405 PCK2Q16822 640 aa12.27□□□□□ -0.45
PTPRF-202ENST00000372405 CARD17Q5XLA6 110 aa12.27□□□□□ -0.45
PTPRF-202ENST00000372405 DNM1P34Q6PK57 102 aa12.27□□□□□ -0.45
PTPRF-202ENST00000372405 CREB3L2Q70SY1 520 aa12.27□□□□□ -0.45
PTPRF-202ENST00000372405 GALNTL5Q7Z4T8 443 aa12.27□□□□□ -0.45
PTPRF-202ENST00000372405 KCTD20Q7Z5Y7 419 aa12.27□□□□□ -0.45
PTPRF-202ENST00000372405 UBQLNLQ8IYU4 475 aa12.27□□□□□ -0.45
PTPRF-202ENST00000372405 YIPF7Q8N8F6 280 aa12.27□□□□□ -0.45
PTPRF-202ENST00000372405 RGP1Q92546 391 aaPredicted RBP12.27□□□□□ -0.45
PTPRF-202ENST00000372405 NSMAFQ92636 917 aa12.27□□□□□ -0.45
PTPRF-202ENST00000372405 ZNF385AQ96PM9 386 aaKnown RBP12.27□□□□□ -0.45
PTPRF-202ENST00000372405 HMG20AQ9NP66 347 aa12.27□□□□□ -0.45
PTPRF-202ENST00000372405 GJE1A6NN92 205 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 FAM166BA8MTA8 275 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 KHDRBS3O75525 346 aaKnown RBP12.26□□□□□ -0.45
PTPRF-202ENST00000372405 NCR1O76036 304 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 GLSO94925 669 aaPredicted RBP12.26□□□□□ -0.45
PTPRF-202ENST00000372405 ZFPL1O95159 310 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 IGHG1P01857 330 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 KRT8P05787 483 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 HPNP05981 417 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 MAGEA5P43359 124 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 CLDN17P56750 224 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 RAC3P60763 192 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 ZNF846Q147U1 533 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 POU4F3Q15319 338 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 TRAM1Q15629 374 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 INAQ16352 499 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 ACSM3Q53FZ2 586 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 THEM4Q5T1C6 240 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 LRRN1Q6UXK5 716 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 CEACAM19Q7Z692 300 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 ZIC4Q8N9L1 334 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 S100ZQ8WXG8 99 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 RBP7Q96R05 134 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 OR8B4Q96RC9 309 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 ABHD6Q9BV23 337 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 RNF32Q9H0A6 362 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 KCNN2Q9H2S1 579 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 SMURF1Q9HCE7 757 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 FRRS1LQ9P0K9 344 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 IKZF2Q9UKS7 526 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 CSAG2Q9Y5P2 127 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 DNAJC13O75165 2243 aa12.26□□□□□ -0.45
PTPRF-202ENST00000372405 A0A1B0GVG6 124 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 IQCMA0A1B0GVH7 501 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 CENPBD1B2RD01 187 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 PHYHO14832 338 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 CASKO14936 926 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 CALRP27797 417 aaKnown RBP12.25□□□□□ -0.45
PTPRF-202ENST00000372405 CLRN1P58418 232 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 HBMQ6B0K9 141 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 SLC25A25Q6KCM7 469 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 SLC18B1Q6NT16 456 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 LRFN4Q6PJG9 635 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 SLC25A47Q6Q0C1 308 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 ESPNLQ6ZVH7 1005 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 ASB18Q6ZVZ8 466 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 EGFL6Q8IUX8 553 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 GLB1L2Q8IW92 636 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 MS4A15Q8N5U1 240 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 TMEM251Q8N6I4 163 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 OR9K2Q8NGE7 335 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 NAA11Q9BSU3 229 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-202ENST00000372405 WDR12Q9GZL7 423 aaKnown RBP12.25□□□□□ -0.45
PTPRF-202ENST00000372405 SPTBN2O15020 2390 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 DNPH1O43598 174 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 CXCL13O43927 109 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 VAMP5O95183 116 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 TACSTD2P09758 323 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 POU3F2P20265 443 aaPredicted RBP12.25□□□□□ -0.45
PTPRF-202ENST00000372405 MEOX1P50221 254 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 CARD18P57730 90 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 ROM1Q03395 351 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 EIF2B1Q14232 305 aaKnown RBP12.25□□□□□ -0.45
PTPRF-202ENST00000372405 ZMAT1Q5H9K5 638 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 TEX30Q5JUR7 227 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 PHYHD1Q5SRE7 291 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 SPATC1Q76KD6 591 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 FAM220AQ7Z4H9 259 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 SNX29P2Q8IUI4 249 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 LINC00346Q8IVM7 164 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 FDCSPQ8NFU4 85 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 OR10D3Q8NH80 312 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 ST7LQ8TDW4 575 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 C11orf40Q8WZ69 217 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 HTRA1Q92743 480 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 HAS2Q92819 552 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 MCHR2Q969V1 340 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 SH3GL3Q99963 347 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 ELOVL3Q9HB03 270 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 KLHL9Q9P2J3 617 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 PEX16Q9Y5Y5 336 aa12.25□□□□□ -0.45
PTPRF-202ENST00000372405 A0A1W2PPK0 400 aa12.24□□□□□ -0.45
PTPRF-202ENST00000372405 TRABD2BA6NFA1 517 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms