RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 PPIEQ9UNP9 301 aaKnown RBP18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 COA3Q9Y2R0 106 aaPredicted RBP18.72■□□□□ 0.59
CCDC88B-203ENST00000359902 ANKRD20A5PA0PJZ0 165 aa18.71■□□□□ 0.59
CCDC88B-203ENST00000359902 NAP1L6A6NFF2 107 aa18.71■□□□□ 0.59
CCDC88B-203ENST00000359902 KHDRBS3O75525 346 aaKnown RBP18.71■□□□□ 0.59
CCDC88B-203ENST00000359902 MPZL1O95297 269 aa18.71■□□□□ 0.59
CCDC88B-203ENST00000359902 PNLIPP16233 465 aa18.71■□□□□ 0.59
CCDC88B-203ENST00000359902 SCAND1P57086 179 aa18.71■□□□□ 0.59
CCDC88B-203ENST00000359902 KCTD18Q6PI47 426 aaPredicted RBP18.71■□□□□ 0.59
CCDC88B-203ENST00000359902 KRT77Q7Z794 578 aa18.71■□□□□ 0.59
CCDC88B-203ENST00000359902 ZNF227Q86WZ6 799 aa18.71■□□□□ 0.59
CCDC88B-203ENST00000359902 GLB1L2Q8IW92 636 aa18.71■□□□□ 0.59
CCDC88B-203ENST00000359902 ZNF248Q8NDW4 579 aa18.71■□□□□ 0.59
CCDC88B-203ENST00000359902 ZFP64Q9NPA5 681 aa18.71■□□□□ 0.59
CCDC88B-203ENST00000359902 MED11Q9P086 117 aa18.71■□□□□ 0.59
CCDC88B-203ENST00000359902 ING4Q9UNL4 249 aa18.71■□□□□ 0.59
CCDC88B-203ENST00000359902 FLVCR2Q9UPI3 526 aa18.71■□□□□ 0.59
CCDC88B-203ENST00000359902 TNFSF12-TNFSF13A0A0A6YY99 330 aa18.71■□□□□ 0.58
CCDC88B-203ENST00000359902 A0A1W2PQM1 296 aa18.71■□□□□ 0.58
CCDC88B-203ENST00000359902 RAD1O60671 282 aa18.71■□□□□ 0.58
CCDC88B-203ENST00000359902 LDOC1O95751 146 aaPredicted RBP18.71■□□□□ 0.58
CCDC88B-203ENST00000359902 WNT11O96014 354 aa18.71■□□□□ 0.58
CCDC88B-203ENST00000359902 PSMB1P20618 241 aaKnown RBP18.71■□□□□ 0.58
CCDC88B-203ENST00000359902 CRABP1P29762 137 aa18.71■□□□□ 0.58
CCDC88B-203ENST00000359902 CCKBRP32239 447 aa18.71■□□□□ 0.58
CCDC88B-203ENST00000359902 GLO1Q04760 184 aa18.71■□□□□ 0.58
CCDC88B-203ENST00000359902 PUDPQ08623 228 aa18.71■□□□□ 0.58
CCDC88B-203ENST00000359902 EIF2B1Q14232 305 aaKnown RBP18.71■□□□□ 0.58
CCDC88B-203ENST00000359902 ARSKQ6UWY0 536 aa18.71■□□□□ 0.58
CCDC88B-203ENST00000359902 C9orf62Q8N4C0 152 aa18.71■□□□□ 0.58
CCDC88B-203ENST00000359902 THRSPQ92748 146 aa18.71■□□□□ 0.58
CCDC88B-203ENST00000359902 WDR77Q9BQA1 342 aaPredicted RBP18.71■□□□□ 0.58
CCDC88B-203ENST00000359902 BEX1Q9HBH7 125 aa18.71■□□□□ 0.58
CCDC88B-203ENST00000359902 LY6G6EA0A0G2JKS1 128 aa18.7■□□□□ 0.58
CCDC88B-203ENST00000359902 ACOT7O00154 380 aa18.7■□□□□ 0.58
CCDC88B-203ENST00000359902 PEX14O75381 377 aa18.7■□□□□ 0.58
CCDC88B-203ENST00000359902 SCRG1O75711 98 aa18.7■□□□□ 0.58
CCDC88B-203ENST00000359902 GLSO94925 669 aaPredicted RBP18.7■□□□□ 0.58
CCDC88B-203ENST00000359902 ANXA3P12429 323 aa18.7■□□□□ 0.58
CCDC88B-203ENST00000359902 CFPP27918 469 aa18.7■□□□□ 0.58
CCDC88B-203ENST00000359902 MFGE8Q08431 387 aaPredicted RBP18.7■□□□□ 0.58
CCDC88B-203ENST00000359902 ZP4Q12836 540 aa18.7■□□□□ 0.58
CCDC88B-203ENST00000359902 ELFN2Q5R3F8 820 aa18.7■□□□□ 0.58
CCDC88B-203ENST00000359902 PAPD4Q6PIY7 484 aaKnown RBP18.7■□□□□ 0.58
CCDC88B-203ENST00000359902 DNM1P46Q6ZS02 220 aa18.7■□□□□ 0.58
CCDC88B-203ENST00000359902 MDGA2Q7Z553 956 aa18.7■□□□□ 0.58
CCDC88B-203ENST00000359902 MFSD8Q8NHS3 518 aa18.7■□□□□ 0.58
CCDC88B-203ENST00000359902 C15orf40Q8WUR7 153 aa18.7■□□□□ 0.58
CCDC88B-203ENST00000359902 PMEPA1Q969W9 287 aa18.7■□□□□ 0.58
CCDC88B-203ENST00000359902 GTF2A1LQ9UNN4 478 aa18.7■□□□□ 0.58
CCDC88B-203ENST00000359902 U3KQA8 63 aa18.7■□□□□ 0.58
CCDC88B-203ENST00000359902 TRBV11-1A0A0K0K1C0 115 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 TPPPO94811 219 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 HPXP02790 462 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 EPHA8P29322 1005 aaPredicted RBP18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 APOBEC1P41238 236 aaKnown RBP18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 CCL7P80098 99 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 GALK2Q01415 458 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 OR7A5Q15622 319 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 ASPHD2Q6ICH7 369 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 OR7E24Q6IFN5 339 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 WDFY1Q8IWB7 410 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 EXPH5Q8NEV8 1989 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 XRCC3O43542 346 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 SULT1A3P0DMM9 295 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 SULT1A4P0DMN0 295 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 RIDAP52758 137 aaKnown RBP18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 SUMO3P55854 103 aaPredicted RBP18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 DCDP81605 110 aaKnown RBP18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 OLFML2AQ68BL7 652 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 CREB3L2Q70SY1 520 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 H1FNTQ75WM6 255 aaPredicted RBP18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 FGD2Q7Z6J4 655 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 ZNF454Q8N9F8 522 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 OR51D1Q8NGF3 324 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 ASB10Q8WXI3 467 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 RANBP3Q9H6Z4 567 aaPredicted RBP18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 VDAC3Q9Y277 283 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 LRP12Q9Y561 859 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 HRH3Q9Y5N1 445 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 CACNA1EQ15878 2313 aa18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 ASCC3Q8N3C0 2202 aaKnown RBP18.69■□□□□ 0.58
CCDC88B-203ENST00000359902 ARPC4-TTLL3A0A0A6YYG9 625 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 IGHV5-10-1A0A0J9YXX1 117 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 A6NIZ1 184 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 IFNGR1P15260 489 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 PTGS2P35354 604 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 EMP2P54851 167 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 DLX5P56178 289 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 RAP1BP61224 184 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 RAP1AP62834 184 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 NR0B2Q15466 257 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 CDH24Q86UP0 819 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 CATSPERDQ86XM0 798 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 DACT3Q96B18 629 aaPredicted RBP18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 DUSP23Q9BVJ7 150 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 ANKRD34BA5PLL1 514 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 ITGA5P08648 1049 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 DCTDP32321 178 aa18.68■□□□□ 0.58
CCDC88B-203ENST00000359902 MFSD13AQ14CX5 517 aa18.68■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 84.9 ms