RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 GLIPR1L1Q6UWM5 242 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 CD300AQ9UGN4 299 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 UGT2A1Q9Y4X1 527 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 A6NIZ1 184 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 PDGFBP01127 241 aaPredicted RBP6.72□□□□□ -1.33
VPS13A-202ENST00000357409 RPS2P15880 293 aaKnown RBP6.72□□□□□ -1.33
VPS13A-202ENST00000357409 RAP1BP61224 184 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 RAP1AP62834 184 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 PRB3Q04118 309 aaPredicted RBP6.72□□□□□ -1.33
VPS13A-202ENST00000357409 PGGHGQ32M88 737 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 ZNF546Q86UE3 836 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 ENTHD1Q8IYW4 607 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 TMEM99Q8N816 258 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 SLC7A6Q92536 515 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 MAGT1Q9H0U3 335 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 EXO1Q9UQ84 846 aaKnown RBP6.72□□□□□ -1.33
VPS13A-202ENST00000357409 MEIOCA2RUB1 952 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 OR5K3A6NET4 321 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 UBE2G2P60604 165 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 AGBL4Q5VU57 503 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 STUMQ69YW2 141 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 OR2T2Q6IF00 324 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 C6orf89Q6UWU4 347 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 LCN15Q6UWW0 184 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 B3GNT8Q7Z7M8 397 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 SMCO4Q9NRQ5 59 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 SLC22A11Q9NSA0 550 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 SLC39A9Q9NUM3 307 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 DOK5Q9P104 306 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 ZNF835Q9Y2P0 537 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 CHST2Q9Y4C5 530 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 ATRNO75882 1429 aa6.72□□□□□ -1.33
VPS13A-202ENST00000357409 TNFSF8P32971 234 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 GRB2P62993 217 aaKnown RBP6.71□□□□□ -1.33
VPS13A-202ENST00000357409 RAB31Q13636 194 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 ZNF77Q15935 545 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 CLDN22Q8N7P3 220 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 PTPMT1Q8WUK0 201 aaPredicted RBP6.71□□□□□ -1.33
VPS13A-202ENST00000357409 ACOT11Q8WXI4 607 aaPredicted RBP6.71□□□□□ -1.33
VPS13A-202ENST00000357409 ELSPBP1Q96BH3 223 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 L3HYPDHQ96EM0 354 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 ATOH8Q96SQ7 321 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 GPR45Q9Y5Y3 372 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 SLC22A7Q9Y694 548 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 ZNF93P35789 620 aaPredicted RBP6.71□□□□□ -1.33
VPS13A-202ENST00000357409 RTP5Q14D33 572 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 SP6Q3SY56 376 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 LHX8Q68G74 356 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 MFFQ9GZY8 342 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 BABAM2Q9NXR7 383 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 IGKV3D-11A0A0A0MRZ8 115 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 SCGB2A1O75556 95 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 IGKV3-11P04433 115 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 B4GALT1P15291 398 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 ZNF595Q8IYB9 648 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 OR52I1Q8NGK6 324 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 TMEM106AQ96A25 262 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 GABRG3Q99928 467 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 RTN4RQ9BZR6 473 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 ZNF286AQ9HBT8 521 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 TMEM30AQ9NV96 361 aa6.71□□□□□ -1.33
VPS13A-202ENST00000357409 HOXB3P14651 431 aaPredicted RBP6.71□□□□□ -1.34
VPS13A-202ENST00000357409 PPT1P50897 306 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 PLAURQ03405 335 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 FNDC9Q8TBE3 224 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 CRISPLD2Q9H0B8 497 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 MMP17Q9ULZ9 603 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 GALR3O60755 368 aaPredicted RBP6.71□□□□□ -1.34
VPS13A-202ENST00000357409 FURINP09958 794 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 CHRNB1P11230 501 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 OR10A3P58181 314 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 RAB1AP62820 205 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 TRAM1Q15629 374 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 RSPO4Q2I0M5 234 aaPredicted RBP6.71□□□□□ -1.34
VPS13A-202ENST00000357409 HENMT1Q5T8I9 393 aaKnown RBP6.71□□□□□ -1.34
VPS13A-202ENST00000357409 Q6ZSR9 355 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 PTTG2Q9NZH5 202 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 LTBP3Q9NS15 1303 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 OR5H15A6NDH6 313 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 OR5H14A6NHG9 310 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 OR5H1A6NKK0 313 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 CGB1A6NKQ9 187 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 SRFP11831 508 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 EMX1Q04741 257 aaPredicted RBP6.71□□□□□ -1.34
VPS13A-202ENST00000357409 MPPED2Q15777 294 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 MRPL41Q8IXM3 137 aaKnown RBP6.71□□□□□ -1.34
VPS13A-202ENST00000357409 OR7G2Q8NG99 324 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 OR10R2Q8NGX6 335 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 FAXDC2Q96IV6 333 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 SLC2A8Q9NY64 477 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 USP3Q9Y6I4 520 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 MBTPS2O43462 519 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 IFNA1P01562 189 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 TRIM23P36406 574 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 ATP1A1-AS1Q5TC04 95 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 FAHD2BQ6P2I3 314 aaPredicted RBP6.71□□□□□ -1.34
VPS13A-202ENST00000357409 MAMSTRQ6ZN01 415 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 GDF7Q7Z4P5 450 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 FAHD2AQ96GK7 314 aa6.71□□□□□ -1.34
VPS13A-202ENST00000357409 ARV1Q9H2C2 271 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms