RNA–Protein interactions for RNA: ENST00000347617.10

HMGA1-202, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene HMGA1, Length 1,773 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-202ENST00000347617 BTN3A2P78410 334 aa14.39□□□□□ -0.11
HMGA1-202ENST00000347617 FBXO42Q6P3S6 717 aa14.39□□□□□ -0.11
HMGA1-202ENST00000347617 ZNF550Q7Z398 422 aa14.39□□□□□ -0.11
HMGA1-202ENST00000347617 GABRG1Q8N1C3 465 aa14.39□□□□□ -0.11
HMGA1-202ENST00000347617 FAM160A2Q8N612 972 aaPredicted RBP14.39□□□□□ -0.11
HMGA1-202ENST00000347617 FRMD1Q8N878 549 aa14.39□□□□□ -0.11
HMGA1-202ENST00000347617 DUSP19Q8WTR2 217 aa14.39□□□□□ -0.11
HMGA1-202ENST00000347617 SPACA7Q96KW9 195 aa14.39□□□□□ -0.11
HMGA1-202ENST00000347617 TCEAL2Q9H3H9 227 aaPredicted RBP14.39□□□□□ -0.11
HMGA1-202ENST00000347617 POFUT1Q9H488 388 aa14.39□□□□□ -0.11
HMGA1-202ENST00000347617 PLEKHA6Q9Y2H5 1048 aa14.39□□□□□ -0.11
HMGA1-202ENST00000347617 FANCMQ8IYD8 2048 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 A0A0A6YYH2 397 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 URADA6NGE7 173 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 A6NJ64 397 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 WNT11O96014 354 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 SMIM6P0DI80 62 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 FOLR2P14207 255 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 ZNF10P21506 573 aaPredicted RBP14.38□□□□□ -0.11
HMGA1-202ENST00000347617 HOXA6P31267 233 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 DLSTP36957 453 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 MAP3K8P41279 467 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 CXCL12P48061 93 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 RPS15P62841 145 aaKnown RBP14.38□□□□□ -0.11
HMGA1-202ENST00000347617 NAAAQ02083 359 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 MELKQ14680 651 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 ULK3Q6PHR2 472 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 FIGLAQ6QHK4 219 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 DEFB123Q8N688 67 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 LINC00469Q8N7U9 141 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 SLC37A2Q8TED4 501 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 GLYATL2Q8WU03 294 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 RSC1A1Q92681 617 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 GPX7Q96SL4 187 aaPredicted RBP14.38□□□□□ -0.11
HMGA1-202ENST00000347617 SEC11CQ9BY50 192 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 CCDC86Q9H6F5 360 aaKnown RBP14.38□□□□□ -0.11
HMGA1-202ENST00000347617 PILRAQ9UKJ1 303 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 PCDHB10Q9UN67 800 aa14.38□□□□□ -0.11
HMGA1-202ENST00000347617 TRBV23OR9-2A0A075B6M9 112 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 GNB5O14775 395 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 PHYHO14832 338 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 APEHP13798 732 aaKnown RBP14.37□□□□□ -0.11
HMGA1-202ENST00000347617 CD34P28906 385 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 FNTBP49356 437 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 PRPS1P60891 318 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 RASGEF1BQ0VAM2 473 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 GUCA2BQ16661 112 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 ALG10BQ5I7T1 473 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 NKAPLQ5M9Q1 402 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 NKAIN2Q5VXU1 208 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 IL34Q6ZMJ4 242 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 GKN2Q86XP6 184 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 GRHL3Q8TE85 626 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 DNASE2BQ8WZ79 361 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 CNTNAP3BQ96NU0 1288 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 OR2A5Q96R48 311 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 CDC6Q99741 560 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 EDEM2Q9BV94 578 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 LRRC61Q9BV99 259 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 ESRP2Q9H6T0 727 aaKnown RBP14.37□□□□□ -0.11
HMGA1-202ENST00000347617 FLRT3Q9NZU0 649 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 KCNE5Q9UJ90 142 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 ARHGEF17Q96PE2 2063 aaPredicted RBP14.37□□□□□ -0.11
HMGA1-202ENST00000347617 CCDC163A0A0D9SF12 145 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 UPK3AO75631 287 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 RAB3DO95716 219 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 SMIM10L1P0DMW3 83 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 PTHLHP12272 177 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 PAX6P26367 422 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 FASLGP48023 281 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 CXADRP78310 365 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 MEF2DQ14814 521 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 FAM74A1Q5RGS3 127 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.37□□□□□ -0.11
HMGA1-202ENST00000347617 VN1R4Q7Z5H5 301 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 INO80EQ8NBZ0 244 aaPredicted RBP14.37□□□□□ -0.11
HMGA1-202ENST00000347617 THAP6Q8TBB0 222 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 RNF166Q96A37 237 aaPredicted RBP14.37□□□□□ -0.11
HMGA1-202ENST00000347617 COL26A1Q96A83 441 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 SMIM10Q96HG1 83 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 ST6GALNAC1Q9NSC7 600 aaPredicted RBP14.37□□□□□ -0.11
HMGA1-202ENST00000347617 MYEF2Q9P2K5 600 aaKnown RBP14.37□□□□□ -0.11
HMGA1-202ENST00000347617 ZNF337Q9Y3M9 751 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 SIT1Q9Y3P8 196 aa14.37□□□□□ -0.11
HMGA1-202ENST00000347617 TRAV18A0A075B6X5 111 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 A0A0J9YY10 115 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 LOC100289279A0A1B0GTE1 492 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 GPR31O00270 319 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 PEX12O00623 359 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 EIF1AYO14602 144 aaKnown RBP14.36□□□□□ -0.11
HMGA1-202ENST00000347617 CD3DP04234 171 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 SLC35G6P0C7Q6 338 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 BDKRB2P30411 391 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 RPL4P36578 427 aaKnown RBP14.36□□□□□ -0.11
HMGA1-202ENST00000347617 EIF1AXP47813 144 aaKnown RBP14.36□□□□□ -0.11
HMGA1-202ENST00000347617 HHEXQ03014 270 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 RAB11BQ15907 218 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 PNLIPRP3Q17RR3 467 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 SWI5Q1ZZU3 235 aa14.36□□□□□ -0.11
HMGA1-202ENST00000347617 FCRL6Q6DN72 434 aa14.36□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms