RNA–Protein interactions for RNA: ENST00000338585.6

MCF2-201, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,826 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-201ENST00000338585 ABHD3Q8WU67 409 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 THEM6Q8WUY1 208 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 ZHX1-C8orf76Q96EF9 292 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 SLC25A44Q96H78 314 aaPredicted RBP3.68□□□□□ -1.82
MCF2-201ENST00000338585 ADAD1Q96M93 576 aaKnown RBP3.68□□□□□ -1.82
MCF2-201ENST00000338585 BCL7BQ9BQE9 202 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 NAA11Q9BSU3 229 aaPredicted RBP3.68□□□□□ -1.82
MCF2-201ENST00000338585 TMUB1Q9BVT8 246 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 HDHD5Q9BXW7 423 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 ISYNA1Q9NPH2 558 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 TRIM36Q9NQ86 728 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 TXNL4BQ9NX01 149 aaKnown RBP3.68□□□□□ -1.82
MCF2-201ENST00000338585 SLCO1C1Q9NYB5 712 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 SPRR3Q9UBC9 169 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 MRM2Q9UI43 246 aaKnown RBP3.68□□□□□ -1.82
MCF2-201ENST00000338585 ST6GALNAC2Q9UJ37 374 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 LAMP5Q9UJQ1 280 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 STUB1Q9UNE7 303 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 RASD1Q9Y272 281 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 PCDHGB7Q9Y5F8 929 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 MGAQ8IWI9 3026 aa3.68□□□□□ -1.82
MCF2-201ENST00000338585 PHF3Q92576 2039 aaKnown RBP3.67□□□□□ -1.82
MCF2-201ENST00000338585 A0A1W2PPL8 197 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 SMIM30A4D0T7 59 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 CD8B2A6NJW9 211 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 ZNF726A6NNF4 738 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 NPIPA2E9PIF3 369 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 NPIPA3F8WFD2 350 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 KHDRBS3O75525 346 aaKnown RBP3.67□□□□□ -1.82
MCF2-201ENST00000338585 AQP8O94778 261 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 ABHD16AO95870 558 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 IGHG1P01857 330 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 QDPRP09417 244 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 CLEC2LP0C7M8 214 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 CD8BP10966 210 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 ZNF708P17019 499 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 EDNRAP25101 427 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 GABRA5P31644 462 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 SERPINB10P48595 397 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 TGM4P49221 684 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 NANOS3P60323 173 aaKnown RBP3.67□□□□□ -1.82
MCF2-201ENST00000338585 ACTA2P62736 377 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 ACTG2P63267 376 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 GLO1Q04760 184 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 SLC10A1Q14973 349 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 POU4F3Q15319 338 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 FAM27D1Q5T7N8 215 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 ABLIM2Q6H8Q1 611 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 LRRN1Q6UXK5 716 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 SLC22A16Q86VW1 577 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 ALDH16A1Q8IZ83 802 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 TMEM123Q8N131 208 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 SYS1Q8N2H4 156 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 OTOSQ8NHW6 89 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 TBC1D15Q8TC07 691 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 C11orf40Q8WZ69 217 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 ABTB1Q969K4 478 aaPredicted RBP3.67□□□□□ -1.82
MCF2-201ENST00000338585 MCHR2Q969V1 340 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 PGLYRP3Q96LB9 341 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 RBP7Q96R05 134 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 OR2M2Q96R28 347 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 SMAD5Q99717 465 aaKnown RBP3.67□□□□□ -1.82
MCF2-201ENST00000338585 PDCD1LG2Q9BQ51 273 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 SLIRPQ9GZT3 109 aaKnown RBP3.67□□□□□ -1.82
MCF2-201ENST00000338585 EMC7Q9NPA0 242 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 IKZF2Q9UKS7 526 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 SSR3Q9UNL2 185 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 MSRB2Q9Y3D2 182 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 FLVCR1Q9Y5Y0 555 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 CACNA1GO43497 2377 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 TRAV17A0A0B4J275 112 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 SHISA3A0PJX4 238 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 ACOT7O00154 380 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 GABRPO00591 440 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 DNPH1O43598 174 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 PLPP2O43688 288 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 UPK3AO75631 287 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 ZNF432O94892 652 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 VAMP5O95183 116 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 ZNF24P17028 368 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 RPS19P39019 145 aaKnown RBP3.67□□□□□ -1.82
MCF2-201ENST00000338585 ENTPD1P49961 510 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 GBX2P52951 348 aaPredicted RBP3.67□□□□□ -1.82
MCF2-201ENST00000338585 SIRPAP78324 504 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 BDH1Q02338 343 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 HSF2Q03933 536 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 MXD1Q05195 221 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 EIF2B1Q14232 305 aaKnown RBP3.67□□□□□ -1.82
MCF2-201ENST00000338585 CDK5R1Q15078 307 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 HIST3H3Q16695 136 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 TIMM50Q3ZCQ8 353 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 THEM4Q5T1C6 240 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 LIPNQ5VXI9 398 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 DMKNQ6E0U4 476 aaPredicted RBP3.67□□□□□ -1.82
MCF2-201ENST00000338585 DNM1P34Q6PK57 102 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 SLC25A47Q6Q0C1 308 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 CD200R1LQ6Q8B3 271 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 TMEM91Q6ZNR0 172 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 USP43Q70EL4 1123 aa3.67□□□□□ -1.82
MCF2-201ENST00000338585 FCRLAQ7L513 359 aa3.67□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms