RNA–Protein interactions for RNA: ENST00000334448.5

CCDC88C-202, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best)

Gene CCDC88C, Length 1,055 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-202ENST00000334448 SELENOPP49908 381 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 ENTPD1P49961 510 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 TAS2R43P59537 309 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 CXADRP78310 365 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 ROM1Q03395 351 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 SRYQ05066 204 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 EGR3Q06889 387 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 MRPL28Q13084 256 aaKnown RBP13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 ETFDHQ16134 617 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 SSX1Q16384 188 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 LINC00303Q3SY05 128 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 GPR107Q5VW38 600 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 KCTD20Q7Z5Y7 419 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 P2RY8Q86VZ1 359 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 ERI1Q8IV48 349 aaKnown RBP13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 KDF1Q8NAX2 398 aaPredicted RBP13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 FNDC9Q8TBE3 224 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 RPS4Y2Q8TD47 263 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 ASB17Q8WXJ9 295 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 GPR137Q96N19 417 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 LINC00470Q9BZP3 86 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 GLRX2Q9NS18 164 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 PARPBPQ9NWS1 579 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 BABAM2Q9NXR7 383 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 FREM3P0C091 2139 aa13.22□□□□□ -0.29
CCDC88C-202ENST00000334448 KIAA1549Q9HCM3 1950 aa13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 MGAQ8IWI9 3026 aa13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 TVP23AA6NH52 213 aa13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 ABHD16AO95870 558 aa13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 CD1AP06126 327 aa13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 QDPRP09417 244 aa13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 NTF4P34130 210 aa13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 TIMM50Q3ZCQ8 353 aa13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 KRTCAP3Q53RY4 240 aa13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 GDPGP1Q6ZNW5 385 aa13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 VASH1Q7L8A9 365 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 CHMP1BQ7LBR1 199 aa13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 SSX6Q7RTT6 188 aa13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 AAED1Q7RTV5 226 aa13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 PHC2Q8IXK0 858 aa13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 RFLNBQ8N5W9 214 aa13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 Q8NA96 180 aa13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 OR6N1Q8NGY5 312 aa13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 OR6N2Q8NGY6 317 aa13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 SPRYD4Q8WW59 207 aaPredicted RBP13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 TRIM36Q9NQ86 728 aa13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 CAMK2AQ9UQM7 478 aa13.21□□□□□ -0.29
CCDC88C-202ENST00000334448 ALPK2Q86TB3 2170 aa13.21□□□□□ -0.3
CCDC88C-202ENST00000334448 LAMA5O15230 3695 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 CHD8Q9HCK8 2581 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 SLC22A20A6NK97 555 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 H3BMQ9 156 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 DHHO43323 396 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 LALBAP00709 142 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 YES1P07947 543 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 PSKH1P11801 424 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 GALP22466 123 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 TGM4P49221 684 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 GTF2A1P52655 376 aaPredicted RBP13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 LSM6P62312 80 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 GUSBP1Q15486 140 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 C3AR1Q16581 482 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 CTF1Q16619 201 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 TSTQ16762 297 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 NRN1LQ496H8 165 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 CCDC58Q4VC31 144 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 SLC18B1Q6NT16 456 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 DEGS2Q6QHC5 323 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 PLEKHG7Q6ZR37 379 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 DPY19L4Q7Z388 723 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 CPT1CQ8TCG5 803 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 GATAD2BQ8WXI9 593 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 C11orf40Q8WZ69 217 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 UFD1Q92890 307 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 C4orf36Q96KX1 117 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 TBX5Q99593 518 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 TTYH2Q9BSA4 534 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 RERGLQ9H628 205 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 ISG20L2Q9H9L3 353 aaKnown RBP13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 POLE4Q9NR33 117 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 LAMP5Q9UJQ1 280 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 KLHDC2Q9Y2U9 406 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 ZNF407Q9C0G0 2248 aa13.2□□□□□ -0.3
CCDC88C-202ENST00000334448 MED19A0JLT2 244 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 AHRRA9YTQ3 701 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 PRR32B1ATL7 298 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 RPL36A-HNRNPH2H7BZ11 118 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 ZNF593O00488 134 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 NOL3O60936 208 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 SS18L1O75177 396 aaPredicted RBP13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 HLA-DQA2P01906 255 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 HSMCR30P0CW71 290 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 PTGER4P35408 488 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 ADAM8P78325 824 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 MRPS34P82930 218 aaKnown RBP13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 SF3B4Q15427 424 aaKnown RBP eCLIP13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 CNPY1Q3B7I2 92 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 PHYHD1Q5SRE7 291 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 CARD17Q5XLA6 110 aa13.19□□□□□ -0.3
CCDC88C-202ENST00000334448 CD200R1LQ6Q8B3 271 aa13.19□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms