RNA–Protein interactions for RNA: ENST00000331433.4

CLCNKA-201, Transcript of chloride voltage-gated channel Ka, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CLCNKA, Length 2,475 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLCNKA-201ENST00000331433 GLO1Q04760 184 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 NDUFA5Q16718 116 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 CPEB2Q7Z5Q1 589 aaKnown RBP13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 LIX1LQ8IVB5 337 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 ZNF248Q8NDW4 579 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 OR11H7Q8NGC8 314 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 RNF128Q8TEB7 428 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 MCHR2Q969V1 340 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 CDX2Q99626 313 aaPredicted RBP13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 CRB3Q9BUF7 120 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 NIPAL2Q9H841 368 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 ADAMTS9Q9P2N4 1935 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 DOK2O60496 412 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 STOMP27105 288 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 CCR9P51686 369 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 SNRPD2P62316 118 aaKnown RBP13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 POU3F1Q03052 451 aaPredicted RBP13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 SQSTM1Q13501 440 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 INPP5JQ15735 1006 aaPredicted RBP13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 TEX30Q5JUR7 227 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 C5orf46Q6UWT4 87 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 EID2Q8N6I1 236 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 OR10G3Q8NGC4 313 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 DACT3Q96B18 629 aaPredicted RBP13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 MS4A3Q96HJ5 214 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 C7orf50Q9BRJ6 194 aaKnown RBP13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 OR51J1Q9H342 316 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 KCNK15Q9H427 330 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 HRASLSQ9HDD0 168 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 PRDM6Q9NQX0 595 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 OCIAD1Q9NX40 245 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 COPZ2Q9P299 210 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 KLHL9Q9P2J3 617 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 PPIEQ9UNP9 301 aaKnown RBP13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 FLVCR2Q9UPI3 526 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 LRP12Q9Y561 859 aa13.34□□□□□ -0.27
CLCNKA-201ENST00000331433 IGKV1D-43A0A0B4J1Z2 117 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 HSPB2A8KAH6 182 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 NPIPA5E9PKD4 350 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 AKR7A2O43488 359 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 OR2J2O76002 312 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 KRT33AO76009 404 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 OPN1LWP04000 364 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 RAB40ALP0C0E4 278 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 H2AFB2P0C5Z0 115 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 CRABP1P29762 137 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 BLVRAP53004 296 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 ROM1Q03395 351 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 HSPB2Q16082 182 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 GSG1Q2KHT4 349 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 ASPHD2Q6ICH7 369 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 FAAP20Q6NZ36 180 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 FDX2Q6P4F2 183 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 PPP1R3BQ86XI6 285 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 GIMAP1Q8WWP7 306 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 RAB40AQ8WXH6 277 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 ASB10Q8WXI3 467 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 PLEKHA1Q9HB21 404 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 FBXL3Q9UKT7 428 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 NPIPA1Q9UND3 350 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 VSTM2BA6NLU5 285 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 FABP7O15540 132 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 EFNA2O43921 213 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 KHDRBS3O75525 346 aaKnown RBP13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 CXCL3P19876 107 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 APOBEC1P41238 236 aaKnown RBP13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 TAS2R20P59543 309 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 TLE3Q04726 772 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 C19orf57Q0VDD7 668 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 BTBD16Q32M84 506 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 PHF19Q5T6S3 580 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 PMS2CLQ68D20 193 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 KCTD18Q6PI47 426 aaPredicted RBP13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 H1FNTQ75WM6 255 aaPredicted RBP13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 BTN2A1Q7KYR7 527 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 NDUFAF7Q7L592 441 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 ZNF227Q86WZ6 799 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 LINC00346Q8IVM7 164 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 OR51D1Q8NGF3 324 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 FCAMRQ8WWV6 532 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 MRI1Q9BV20 369 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 C20orf85Q9H1P6 137 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 PPP4R1LQ9P1A2 415 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 STEAP1Q9UHE8 339 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 ZNF222Q9UK12 451 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 PILRBQ9UKJ0 227 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 ETV7Q9Y603 341 aa13.33□□□□□ -0.28
CLCNKA-201ENST00000331433 TMEM127O75204 238 aa13.32□□□□□ -0.28
CLCNKA-201ENST00000331433 FOSL2P15408 326 aa13.32□□□□□ -0.28
CLCNKA-201ENST00000331433 CSRP1P21291 193 aaKnown RBP13.32□□□□□ -0.28
CLCNKA-201ENST00000331433 RIDAP52758 137 aaKnown RBP13.32□□□□□ -0.28
CLCNKA-201ENST00000331433 EFNB2P52799 333 aa13.32□□□□□ -0.28
CLCNKA-201ENST00000331433 TNK1Q13470 666 aa13.32□□□□□ -0.28
CLCNKA-201ENST00000331433 ST3GAL2Q16842 350 aa13.32□□□□□ -0.28
CLCNKA-201ENST00000331433 LAMTOR1Q6IAA8 161 aa13.32□□□□□ -0.28
CLCNKA-201ENST00000331433 OR52N5Q8NH56 324 aa13.32□□□□□ -0.28
CLCNKA-201ENST00000331433 MFSD8Q8NHS3 518 aa13.32□□□□□ -0.28
CLCNKA-201ENST00000331433 C5orf34Q96MH7 638 aa13.32□□□□□ -0.28
CLCNKA-201ENST00000331433 GTPBP2Q9BX10 602 aaKnown RBP13.32□□□□□ -0.28
CLCNKA-201ENST00000331433 SLA2Q9H6Q3 261 aa13.32□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 138 ms