RNA–Protein interactions for RNA: ENST00000326004.4

HMGB1-201, Transcript of high mobility group box 1, humanhuman

TSL 3 BASIC

Gene HMGB1, Length 821 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-201ENST00000326004 SSR1P43307 286 aaKnown RBP2.22□□□□□ -2.05
HMGB1-201ENST00000326004 MAGEA1P43355 309 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 ARRB1P49407 418 aaPredicted RBP2.22□□□□□ -2.05
HMGB1-201ENST00000326004 HLCSP50747 726 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 PRPS1P60891 318 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 RPS15P62841 145 aaKnown RBP2.22□□□□□ -2.05
HMGB1-201ENST00000326004 TGFBR3Q03167 851 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 SPAG1Q07617 926 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 IFT88Q13099 833 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 KLHL38Q2WGJ6 581 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 ALKBH6Q3KRA9 238 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 OR52E8Q6IFG1 317 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 KRTAP5-1Q6L8H4 278 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 TMEM107Q6UX40 140 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 USP50Q70EL3 339 aaPredicted RBP2.22□□□□□ -2.05
HMGB1-201ENST00000326004 OTUD6AQ7L8S5 288 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 ZNF571Q7Z3V5 609 aaPredicted RBP2.22□□□□□ -2.05
HMGB1-201ENST00000326004 C6orf223Q8N319 242 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 GTPBP8Q8N3Z3 284 aaPredicted RBP2.22□□□□□ -2.05
HMGB1-201ENST00000326004 PNKDQ8N490 385 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 BPIFCQ8NFQ6 507 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 OR1L6Q8NGR2 347 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 FAM81AQ8TBF8 368 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 MAGEE2Q8TD90 523 aaPredicted RBP2.22□□□□□ -2.05
HMGB1-201ENST00000326004 BLOC1S5Q8TDH9 187 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 FAM151AQ8WW52 585 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 GIMAP1Q8WWP7 306 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 ELMO1Q92556 727 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 KCNA7Q96RP8 456 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 RNF2Q99496 336 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 TSG101Q99816 390 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 CLSTN2Q9H4D0 955 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 NXF3Q9H4D5 531 aaKnown RBP2.22□□□□□ -2.05
HMGB1-201ENST00000326004 FANCEQ9HB96 536 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 MTRF1LQ9UGC7 380 aaKnown RBP2.22□□□□□ -2.05
HMGB1-201ENST00000326004 ZNF225Q9UK10 706 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 CSDC2Q9Y534 153 aaKnown RBP2.22□□□□□ -2.05
HMGB1-201ENST00000326004 LY75O60449 1722 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 SETXQ7Z333 2677 aaKnown RBP2.22□□□□□ -2.05
HMGB1-201ENST00000326004 ANKRD36BQ8N2N9 1353 aa2.22□□□□□ -2.05
HMGB1-201ENST00000326004 MROH5Q6ZUA9 1318 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 IQGAP3Q86VI3 1631 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 ZDBF2Q9HCK1 2354 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 MKI67P46013 3256 aaKnown RBP2.21□□□□□ -2.06
HMGB1-201ENST00000326004 ZFHX4Q86UP3 3567 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 IQANK1A0A1B0GTG1 560 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 A0A1B0GTQ1 180 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 A0A1W2PPV9 198 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 GJE1A6NN92 205 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 A8MXQ7 604 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 C9JVG2 144 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 SPECC1L-ADORA2AF8WAN1 911 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 KRTAP4-16G5E9R7 235 aaPredicted RBP2.21□□□□□ -2.06
HMGB1-201ENST00000326004 AGPAT2O15120 278 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 KLF8O95600 359 aaPredicted RBP2.21□□□□□ -2.06
HMGB1-201ENST00000326004 INSP01308 110 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 C4BP0C0L5 1744 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 CCDC172P0C7W6 258 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 ZNF853P0CG23 659 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 MCF2P10911 925 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 CHMLP26374 656 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 RDXP35241 583 aaKnown RBP2.21□□□□□ -2.06
HMGB1-201ENST00000326004 CRYBB2P43320 205 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 GYG1P46976 350 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 QARSP47897 775 aaKnown RBP2.21□□□□□ -2.06
HMGB1-201ENST00000326004 CSNK1DP48730 415 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 SLC11A1P49279 550 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 GPM6AP51674 278 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 CDH6P55285 790 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 PLP1P60201 277 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 EIF3EP60228 445 aaKnown RBP2.21□□□□□ -2.06
HMGB1-201ENST00000326004 CDK16Q00536 496 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 DOC2AQ14183 400 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 OXA1LQ15070 435 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 ATP6AP1Q15904 470 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 NRF1Q16656 503 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 CARD16Q5EG05 197 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 DMRTC1Q5HYR2 192 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 PAGE3Q5JUK9 113 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 MARCH8Q5T0T0 291 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 OR2G6Q5TZ20 316 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 Q6ZN92 141 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 RFLNAQ6ZTI6 216 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 PGAP1Q75T13 922 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 MTERF4Q7Z6M4 381 aaKnown RBP2.21□□□□□ -2.06
HMGB1-201ENST00000326004 SLC26A11Q86WA9 606 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 KATNAL2Q8IYT4 538 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 FAM71E2Q8N5Q1 922 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 CEP112Q8N8E3 955 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 TSEN15Q8WW01 171 aaKnown RBP2.21□□□□□ -2.06
HMGB1-201ENST00000326004 UFD1Q92890 307 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 FGF11Q92914 225 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 RPUSD4Q96CM3 377 aaKnown RBP2.21□□□□□ -2.06
HMGB1-201ENST00000326004 CXorf40BQ96DE9 158 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 LINC00167Q96N53 147 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 FMO2Q99518 471 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 MRPL45Q9BRJ2 306 aaKnown RBP2.21□□□□□ -2.06
HMGB1-201ENST00000326004 CENPKQ9BS16 269 aa2.21□□□□□ -2.06
HMGB1-201ENST00000326004 CCDC94Q9BW85 323 aaPredicted RBP2.21□□□□□ -2.06
HMGB1-201ENST00000326004 OR11A1Q9GZK7 315 aa2.21□□□□□ -2.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms