RNA–Protein interactions for RNA: ENST00000303395.8

SCN1A-201, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,533 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-201ENST00000303395 GPR171O14626 319 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 RRP8O43159 456 aaKnown RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ELAVL4P26378 380 aaKnown RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 PSMB6P28072 239 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 PCSK6P29122 969 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 LSSP48449 732 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ELOCQ15369 112 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 FAM109BQ6ICB4 259 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF620Q6ZNG0 422 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 GRINAQ7Z429 371 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 Q8N9G6 341 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 OR13C8Q8NGS7 320 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 CDCA3Q99618 268 aaPredicted RBP4.85□□□□□ -1.63
SCN1A-201ENST00000303395 SLC6A20Q9NP91 592 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 FAM96BQ9Y3D0 163 aa4.85□□□□□ -1.63
SCN1A-201ENST00000303395 A0A1B0GVT2 93 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 HELTA6NFD8 242 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 A8MUA0 341 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 ST8SIA3O43173 380 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 GALR3O60755 368 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-201ENST00000303395 HLA-AP01891 365 aaKnown RBP4.84□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF28P17035 718 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 SULT1A2P50226 295 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 CCR6P51684 374 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 SUB1P53999 127 aaKnown RBP eCLIP4.84□□□□□ -1.63
SCN1A-201ENST00000303395 PJVKQ0ZLH3 352 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 FLYWCH1Q4VC44 716 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 OR10K2Q6IF99 312 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF585AQ6P3V2 769 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 SBSNQ6UWP8 590 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 ZNF384Q8TF68 577 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 GPR137Q96N19 417 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 ATP5SQ99766 215 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 ACPTQ9BZG2 426 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 WDR76Q9H967 626 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 LRIT1Q9P2V4 623 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 PUS1Q9Y606 427 aaKnown RBP eCLIP4.84□□□□□ -1.63
SCN1A-201ENST00000303395 ECM29Q5VYK3 1845 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 WNK3Q9BYP7 1800 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 MT-ND6P03923 174 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 DCNP07585 359 aaKnown RBP4.84□□□□□ -1.63
SCN1A-201ENST00000303395 GRPRP30550 384 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 SPINT3P49223 89 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 CXADRP78310 365 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 OR8B8Q15620 311 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 ATP6V1FQ16864 119 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 NSUN5P2Q63ZY6 315 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 OR4C11Q6IEV9 310 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 ARRDC2Q8TBH0 407 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 YIPF5Q969M3 257 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 AKR1E2Q96JD6 320 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 RBM14Q96PK6 669 aaKnown RBP4.84□□□□□ -1.63
SCN1A-201ENST00000303395 MBOAT4Q96T53 435 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 MCTS1Q9ULC4 181 aaKnown RBP4.84□□□□□ -1.63
SCN1A-201ENST00000303395 PTRH2Q9Y3E5 179 aaKnown RBP4.84□□□□□ -1.63
SCN1A-201ENST00000303395 ROBO1Q9Y6N7 1651 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 LEFTY1O75610 366 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 SULT1A3P0DMM9 295 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 SULT1A4P0DMN0 295 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 TIMP2P16035 220 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 GABRR2P28476 465 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 GALNSP34059 522 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 CSNK1EP49674 416 aaKnown RBP4.84□□□□□ -1.63
SCN1A-201ENST00000303395 ERVFC1-1P60608 527 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 HTR4Q13639 388 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 ETV3LQ6ZN32 361 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 MAVSQ7Z434 540 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 DMBX1Q8NFW5 382 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 LILRB1Q8NHL6 650 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-201ENST00000303395 ZDHHC1Q8WTX9 485 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 EGLN2Q96KS0 407 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 LINC00615Q96LM1 132 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-201ENST00000303395 PKMYT1Q99640 499 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 NCOR1P1Q9H4R4 102 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 RANGRFQ9HD47 186 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-201ENST00000303395 PRSS16Q9NQE7 514 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 GKN1Q9NS71 199 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 NXT1Q9UKK6 140 aaKnown RBP4.84□□□□□ -1.63
SCN1A-201ENST00000303395 PIKFYVEQ9Y2I7 2098 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 TMEM72A0PK05 275 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 GABRR3A8MPY1 467 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 GFRA2O00451 464 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 PPM1DO15297 605 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 SELENOFO60613 162 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 LCATP04180 440 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 RPE65Q16518 533 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 SYT14P1Q58G82 188 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 C9orf152Q5JTZ5 239 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 NADSYN1Q6IA69 706 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 ADAMTSL4Q6UY14 1074 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 TMIGD2Q96BF3 282 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 METTL17Q9H7H0 456 aaPredicted RBP4.84□□□□□ -1.63
SCN1A-201ENST00000303395 FKRPQ9H9S5 495 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 MED13LQ71F56 2210 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 HEPACAM2A8MVW5 462 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 TMEM233B4DJY2 109 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 LGALS8O00214 317 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 PLPP2O43688 288 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 SOD2P04179 222 aa4.84□□□□□ -1.63
SCN1A-201ENST00000303395 TK1P04183 234 aa4.84□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms