RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 MRPL39Q9NYK5 338 aaKnown RBP18.03■□□□□ 0.48
VPS53-201ENST00000291074 U3KQA8 63 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 MS4A18H0YCH9 400 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 GPR171O14626 319 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 ZNF780AO75290 641 aaPredicted RBP18.03■□□□□ 0.48
VPS53-201ENST00000291074 ZNF432O94892 652 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 RAB40ALP0C0E4 278 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 EPHA8P29322 1005 aaPredicted RBP18.03■□□□□ 0.48
VPS53-201ENST00000291074 TAS2R20P59543 309 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 MS4A18Q3C1V0 323 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 ASPHD2Q6ICH7 369 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 KRT77Q7Z794 578 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 PLCZ1Q86YW0 608 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 OR11G2Q8NGC1 345 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 RAB40AQ8WXH6 277 aa18.03■□□□□ 0.48
VPS53-201ENST00000291074 WDR77Q9BQA1 342 aaPredicted RBP18.03■□□□□ 0.48
VPS53-201ENST00000291074 COL6A3P12111 3177 aa18.02■□□□□ 0.48
VPS53-201ENST00000291074 ANKUB1A6NFN9 424 aa18.02■□□□□ 0.48
VPS53-201ENST00000291074 IGHMP01871 453 aa18.02■□□□□ 0.48
VPS53-201ENST00000291074 CSRP1P21291 193 aaKnown RBP18.02■□□□□ 0.48
VPS53-201ENST00000291074 EFNB2P52799 333 aa18.02■□□□□ 0.48
VPS53-201ENST00000291074 PUDPQ08623 228 aa18.02■□□□□ 0.48
VPS53-201ENST00000291074 FOXF1Q12946 379 aa18.02■□□□□ 0.48
VPS53-201ENST00000291074 LCN10Q6JVE6 187 aa18.02■□□□□ 0.48
VPS53-201ENST00000291074 RNF128Q8TEB7 428 aa18.02■□□□□ 0.48
VPS53-201ENST00000291074 TMEM234Q8WY98 164 aa18.02■□□□□ 0.48
VPS53-201ENST00000291074 APMAPQ9HDC9 416 aa18.02■□□□□ 0.48
VPS53-201ENST00000291074 ADAMTS9Q9P2N4 1935 aa18.02■□□□□ 0.48
VPS53-201ENST00000291074 H3BML4 177 aa18.02■□□□□ 0.47
VPS53-201ENST00000291074 OR2T1O43869 369 aa18.02■□□□□ 0.47
VPS53-201ENST00000291074 RAF1P04049 648 aa18.02■□□□□ 0.47
VPS53-201ENST00000291074 IFNGR1P15260 489 aa18.02■□□□□ 0.47
VPS53-201ENST00000291074 DCTDP32321 178 aa18.02■□□□□ 0.47
VPS53-201ENST00000291074 ACY1Q03154 408 aa18.02■□□□□ 0.47
VPS53-201ENST00000291074 ZNF227Q86WZ6 799 aa18.02■□□□□ 0.47
VPS53-201ENST00000291074 OR51D1Q8NGF3 324 aa18.02■□□□□ 0.47
VPS53-201ENST00000291074 HGDQ93099 445 aa18.02■□□□□ 0.47
VPS53-201ENST00000291074 FBXL3Q9UKT7 428 aa18.02■□□□□ 0.47
VPS53-201ENST00000291074 LRP12Q9Y561 859 aa18.02■□□□□ 0.47
VPS53-201ENST00000291074 ETV7Q9Y603 341 aa18.02■□□□□ 0.47
VPS53-201ENST00000291074 A0A1B0GTQ1 180 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 SIGLEC6O43699 453 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 HPXP02790 462 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 C17orf67Q0P5P2 114 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 MAMSTRQ6ZN01 415 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 OR56B4Q8NH76 319 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 ASB17Q8WXJ9 295 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 OR10A4Q9H209 315 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 MED29Q9NX70 200 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 STEAP1Q9UHE8 339 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 TMEM265A0A087WTH1 108 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 IGKV1D-43A0A0B4J1Z2 117 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 IGHV5-10-1A0A0J9YXX1 117 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 ITGA5P08648 1049 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 VEGFCP49767 419 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 LYSMD4Q5XG99 296 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 CD276Q5ZPR3 534 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 FDX2Q6P4F2 183 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 NDUFAF7Q7L592 441 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 MISPQ8IVT2 679 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 C9orf62Q8N4C0 152 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 GON7Q9BXV9 100 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 AKIRIN1Q9H9L7 192 aaPredicted RBP18.01■□□□□ 0.47
VPS53-201ENST00000291074 ZFP64Q9NPA5 681 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 SIT1Q9Y3P8 196 aa18.01■□□□□ 0.47
VPS53-201ENST00000291074 GDF9O60383 454 aa18■□□□□ 0.47
VPS53-201ENST00000291074 EMP2P54851 167 aa18■□□□□ 0.47
VPS53-201ENST00000291074 GALK2Q01415 458 aa18■□□□□ 0.47
VPS53-201ENST00000291074 POU3F1Q03052 451 aaPredicted RBP18■□□□□ 0.47
VPS53-201ENST00000291074 TEX30Q5JUR7 227 aa18■□□□□ 0.47
VPS53-201ENST00000291074 BIVMQ86UB2 503 aa18■□□□□ 0.47
VPS53-201ENST00000291074 LINC00346Q8IVM7 164 aa18■□□□□ 0.47
VPS53-201ENST00000291074 MRI1Q9BV20 369 aa18■□□□□ 0.47
VPS53-201ENST00000291074 KLRF1Q9NZS2 232 aa18■□□□□ 0.47
VPS53-201ENST00000291074 TNFSF12-TNFSF13A0A0A6YY99 330 aa18■□□□□ 0.47
VPS53-201ENST00000291074 HSPB2A8KAH6 182 aa18■□□□□ 0.47
VPS53-201ENST00000291074 TOX3O15405 576 aaPredicted RBP18■□□□□ 0.47
VPS53-201ENST00000291074 ROM1Q03395 351 aa18■□□□□ 0.47
VPS53-201ENST00000291074 GLO1Q04760 184 aa18■□□□□ 0.47
VPS53-201ENST00000291074 C19orf57Q0VDD7 668 aa18■□□□□ 0.47
VPS53-201ENST00000291074 NR0B2Q15466 257 aa18■□□□□ 0.47
VPS53-201ENST00000291074 INPP5JQ15735 1006 aaPredicted RBP18■□□□□ 0.47
VPS53-201ENST00000291074 HSPB2Q16082 182 aa18■□□□□ 0.47
VPS53-201ENST00000291074 ASB10Q8WXI3 467 aa18■□□□□ 0.47
VPS53-201ENST00000291074 ST8SIA1Q92185 356 aa18■□□□□ 0.47
VPS53-201ENST00000291074 CCDC74BQ96LY2 380 aa18■□□□□ 0.47
VPS53-201ENST00000291074 HYLS1Q96M11 299 aa18■□□□□ 0.47
VPS53-201ENST00000291074 STMN3Q9NZ72 180 aa18■□□□□ 0.47
VPS53-201ENST00000291074 AKAP7Q9P0M2 348 aaPredicted RBP18■□□□□ 0.47
VPS53-201ENST00000291074 RABL2AQ9UBK7 228 aaPredicted RBP18■□□□□ 0.47
VPS53-201ENST00000291074 RARRES3Q9UL19 164 aa18■□□□□ 0.47
VPS53-201ENST00000291074 RABL2BQ9UNT1 228 aa18■□□□□ 0.47
VPS53-201ENST00000291074 ANKRD20A5PA0PJZ0 165 aa17.99■□□□□ 0.47
VPS53-201ENST00000291074 NPIPA5E9PKD4 350 aa17.99■□□□□ 0.47
VPS53-201ENST00000291074 OPN1LWP04000 364 aa17.99■□□□□ 0.47
VPS53-201ENST00000291074 ANXA3P12429 323 aa17.99■□□□□ 0.47
VPS53-201ENST00000291074 RIDAP52758 137 aaKnown RBP17.99■□□□□ 0.47
VPS53-201ENST00000291074 DCDP81605 110 aaKnown RBP17.99■□□□□ 0.47
VPS53-201ENST00000291074 PLPP7Q8NBV4 271 aa17.99■□□□□ 0.47
VPS53-201ENST00000291074 ZNF248Q8NDW4 579 aa17.99■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms