RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 FBXO4Q9UKT5 387 aa11.46□□□□□ -0.57
LIG1-201ENST00000263274 FREM3P0C091 2139 aa11.46□□□□□ -0.57
LIG1-201ENST00000263274 KIF26BQ2KJY2 2108 aa11.46□□□□□ -0.57
LIG1-201ENST00000263274 G3V3Q6 166 aa11.46□□□□□ -0.58
LIG1-201ENST00000263274 UPK3AO75631 287 aa11.46□□□□□ -0.58
LIG1-201ENST00000263274 CALCBP10092 127 aa11.46□□□□□ -0.58
LIG1-201ENST00000263274 TNFRSF4P43489 277 aa11.46□□□□□ -0.58
LIG1-201ENST00000263274 HSD17B7P56937 341 aa11.46□□□□□ -0.58
LIG1-201ENST00000263274 H2BFSP57053 126 aa11.46□□□□□ -0.58
LIG1-201ENST00000263274 ZP2Q05996 745 aa11.46□□□□□ -0.58
LIG1-201ENST00000263274 MESTQ5EB52 335 aa11.46□□□□□ -0.58
LIG1-201ENST00000263274 WDR38Q5JTN6 314 aa11.46□□□□□ -0.58
LIG1-201ENST00000263274 GLYATL3Q5SZD4 288 aa11.46□□□□□ -0.58
LIG1-201ENST00000263274 ZNF626Q68DY1 528 aa11.46□□□□□ -0.58
LIG1-201ENST00000263274 TMEM205Q6UW68 189 aa11.46□□□□□ -0.58
LIG1-201ENST00000263274 GSG1LQ6UXU4 331 aa11.46□□□□□ -0.58
LIG1-201ENST00000263274 OR2AK2Q8NG84 335 aa11.46□□□□□ -0.58
LIG1-201ENST00000263274 TAAR8Q969N4 342 aa11.46□□□□□ -0.58
LIG1-201ENST00000263274 NPDC1Q9NQX5 325 aaPredicted RBP11.46□□□□□ -0.58
LIG1-201ENST00000263274 DHCR7Q9UBM7 475 aaKnown RBP11.46□□□□□ -0.58
LIG1-201ENST00000263274 CYB5R1Q9UHQ9 305 aa11.46□□□□□ -0.58
LIG1-201ENST00000263274 DHDHQ9UQ10 334 aa11.46□□□□□ -0.58
LIG1-201ENST00000263274 IGKV1D-42A0A075B6H8 117 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 GGT3PA6NGU5 568 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 SULT1B1O43704 296 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 UTS2O95399 124 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 IGF2P01344 180 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 AKAIN1P0CW23 69 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 STEAP1BQ6NZ63 245 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 GPAT4Q86UL3 456 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 FAM160A2Q8N612 972 aaPredicted RBP11.45□□□□□ -0.58
LIG1-201ENST00000263274 ZNF454Q8N9F8 522 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 PHYHIPQ92561 330 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 TSLPQ969D9 159 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 TSPAN32Q96QS1 320 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 CKLFQ9UBR5 152 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 VPS13AQ96RL7 3174 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 CD2P06729 351 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 ACHEP22303 614 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 VAMP1P23763 118 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 GGTLC2Q14390 218 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 ZNF141Q15928 474 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 CMIPQ8IY22 773 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 BEST3Q8N1M1 668 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 ACBD4Q8NC06 268 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 ZDHHC19Q8WVZ1 309 aaPredicted RBP11.45□□□□□ -0.58
LIG1-201ENST00000263274 SCARF2Q96GP6 870 aaPredicted RBP11.45□□□□□ -0.58
LIG1-201ENST00000263274 ZNF578Q96N58 590 aaPredicted RBP11.45□□□□□ -0.58
LIG1-201ENST00000263274 LMF2Q9BU23 707 aaKnown RBP11.45□□□□□ -0.58
LIG1-201ENST00000263274 HPF1Q9NWY4 346 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 COMMD9Q9P000 198 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 DOCK8Q8NF50 2099 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 PLSCR5A0PG75 271 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 A6NCN8 305 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 OR4C45A6NMZ5 311 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 LINC01387J3KSC0 135 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 SDC3O75056 442 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 MPZL1O95297 269 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 ITGA5P08648 1049 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 PNMTP11086 282 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 BTF3P20290 206 aaKnown RBP11.45□□□□□ -0.58
LIG1-201ENST00000263274 FOXL2P58012 376 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 MRPS10P82664 201 aaKnown RBP11.45□□□□□ -0.58
LIG1-201ENST00000263274 ZNF273Q14593 569 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 KCTD9Q7L273 389 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 COMMD2Q86X83 199 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 ADGRG3Q86Y34 549 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 LINC00346Q8IVM7 164 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 PDZD9Q8IXQ8 264 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 OR52H1Q8NGJ2 320 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 PHOSPHO2Q8TCD6 241 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 SLC25A44Q96H78 314 aaPredicted RBP11.45□□□□□ -0.58
LIG1-201ENST00000263274 OR11A1Q9GZK7 315 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 TINAGL1Q9GZM7 467 aaPredicted RBP11.45□□□□□ -0.58
LIG1-201ENST00000263274 SEMA6CQ9H3T2 930 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 POFUT1Q9H488 388 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 ZCCHC4Q9H5U6 513 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 PRODH2Q9UF12 536 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 PCOLCE2Q9UKZ9 415 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 MOKQ9UQ07 419 aa11.45□□□□□ -0.58
LIG1-201ENST00000263274 FANCMQ8IYD8 2048 aa11.44□□□□□ -0.58
LIG1-201ENST00000263274 XRCC3O43542 346 aa11.44□□□□□ -0.58
LIG1-201ENST00000263274 FOXS1O43638 330 aa11.44□□□□□ -0.58
LIG1-201ENST00000263274 CTAG2O75638 210 aa11.44□□□□□ -0.58
LIG1-201ENST00000263274 OPN1LWP04000 364 aa11.44□□□□□ -0.58
LIG1-201ENST00000263274 GFERP55789 205 aa11.44□□□□□ -0.58
LIG1-201ENST00000263274 GK2Q14410 553 aaPredicted RBP11.44□□□□□ -0.58
LIG1-201ENST00000263274 DMRTC1Q5HYR2 192 aa11.44□□□□□ -0.58
LIG1-201ENST00000263274 NKAIN2Q5VXU1 208 aa11.44□□□□□ -0.58
LIG1-201ENST00000263274 ZNF546Q86UE3 836 aa11.44□□□□□ -0.58
LIG1-201ENST00000263274 LURAP1LQ8IV03 231 aa11.44□□□□□ -0.58
LIG1-201ENST00000263274 ZNF471Q9BX82 626 aaPredicted RBP11.44□□□□□ -0.58
LIG1-201ENST00000263274 ZNF230Q9UIE0 474 aaPredicted RBP11.44□□□□□ -0.58
LIG1-201ENST00000263274 SPAG17Q6Q759 2223 aa11.44□□□□□ -0.58
LIG1-201ENST00000263274 H7C417 338 aa11.44□□□□□ -0.58
LIG1-201ENST00000263274 ICOSLGO75144 302 aa11.44□□□□□ -0.58
LIG1-201ENST00000263274 GPR3P46089 330 aa11.44□□□□□ -0.58
LIG1-201ENST00000263274 EIF2B1Q14232 305 aaKnown RBP11.44□□□□□ -0.58
LIG1-201ENST00000263274 ELFN2Q5R3F8 820 aa11.44□□□□□ -0.58
LIG1-201ENST00000263274 C1orf189Q5VU69 101 aa11.44□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms