RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 DTWD1Q8N5C7 304 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 GRHL3Q8TE85 626 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 PRRT1Q99946 306 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 NMNAT1Q9HAN9 279 aaPredicted RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 APMAPQ9HDC9 416 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 EXOSC3Q9NQT5 275 aaKnown RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 MRPL15Q9P015 296 aaKnown RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 LPAR3Q9UBY5 353 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 PISDQ9UG56 409 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 KLK4Q9Y5K2 254 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 FAM24AA6NFZ4 105 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 FAM166BA8MTA8 275 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 MCRIP1C9JLW8 97 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 ARPC1BO15143 372 aaKnown RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 GJB3O75712 270 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 LGALS2P05162 132 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 MMP7P09237 267 aaPredicted RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 FBP1P09467 338 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 NME2P22392 152 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SSTR2P30874 369 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 MTPNP58546 118 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 ALX1Q15699 326 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 TSGA10IPQ3SY00 556 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 RPL22L1Q6P5R6 122 aaKnown RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 FA2HQ7L5A8 372 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 RNF130Q86XS8 419 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 DTX1Q86Y01 620 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 OR13J1Q8NGT2 312 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 OR9A1PQ8NGU1 263 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 CPNE4Q96A23 557 aaPredicted RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 MIB2Q96AX9 1013 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 MVB12AQ96EY5 273 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 AKIRIN1Q9H9L7 192 aaPredicted RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 DDX4Q9NQI0 724 aaKnown RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 BET1LQ9NYM9 111 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 WSB2Q9NYS7 404 aaPredicted RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 KLHL21Q9UJP4 597 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 CFAP20Q9Y6A4 193 aaKnown RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 TSPAN11A1L157 253 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 NIPSNAP2O75323 286 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 BANF1O75531 89 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 GPX5O75715 221 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 RBP4P02753 201 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 STSP08842 583 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 MYOGP15173 224 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 AMTP48728 403 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SLC35A1P78382 337 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SLAMF1Q13291 335 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 KIR2DS3Q14952 304 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 PAFAH1B3Q15102 231 aaKnown RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 ODF4Q2M2E3 257 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SLC25A52Q3SY17 297 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 PRAMEF5Q5TYX0 476 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 C18orf63Q68DL7 685 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 MFSD6LQ8IWD5 586 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SGPP2Q8IWX5 399 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 C17orf78Q8N4C9 275 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 C15orf54Q8N8G6 183 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SH3RF2Q8TEC5 729 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 ST8SIA4Q92187 359 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 FCRL1Q96LA6 429 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 NKX3-1Q99801 234 aaPredicted RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 PARD6AQ9NPB6 346 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 VAPAQ9P0L0 249 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 CTSFQ9UBX1 484 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 NFAT5O94916 1531 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 GABRPO00591 440 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 AQP9O43315 295 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 GALR2O43603 387 aaPredicted RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 GFRA3O60609 400 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 TK1P04183 234 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 ZNF154Q13106 437 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SSX1Q16384 188 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 DUSP7Q16829 419 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 GSG1Q2KHT4 349 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 EARS2Q5JPH6 523 aaKnown RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 AFMIDQ63HM1 303 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 WSCD1Q658N2 575 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 VHLLQ6RSH7 139 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 GDF7Q7Z4P5 450 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 TBC1D10CQ8IV04 446 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 C1orf210Q8IVY1 113 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 PRSS58Q8IYP2 241 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 ARL6IP6Q8N6S5 226 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 NAT8LQ8N9F0 302 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 WDR31Q8NA23 367 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 FAM131CQ96AQ9 280 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 OR5B2Q96R09 309 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 ELF4Q99607 663 aaPredicted RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 CXXC4Q9H2H0 198 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 OR51B5Q9H339 312 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 AGO3Q9H9G7 860 aaKnown RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 TAF1LQ8IZX4 1826 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 TMEM189-UBE2V1I3L0A0 370 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 HS3ST1O14792 307 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 GJB5O95377 273 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 CA3P07451 260 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 HOXD11P31277 338 aaPredicted RBP2.58□□□□□ -2
SCN1A-219ENST00000641575 CCR7P32248 378 aa2.58□□□□□ -2
SCN1A-219ENST00000641575 SLC18A1P54219 525 aa2.58□□□□□ -2
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms