RNA–Protein interactions for RNA: ENST00000636351.1

CLN3-247, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,292 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-247ENST00000636351 PTP4A3O75365 173 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 PPP1R3DO95685 299 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 WNT11O96014 354 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 GASTP01350 101 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 QDPRP09417 244 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 FCGR1AP12314 374 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 CAPZA2P47755 286 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 RPS6KA3P51812 740 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 ARHGDIAP52565 204 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 PPP2R2BQ00005 443 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 KRR1Q13601 381 aaKnown RBP15.57■□□□□ 0.08
CLN3-247ENST00000636351 TBRG1Q3YBR2 411 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 ZNF770Q6IQ21 691 aaPredicted RBP15.57■□□□□ 0.08
CLN3-247ENST00000636351 DPY19L2P2Q6ZN68 376 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 SSX8Q7RTT4 187 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 ARIH2OSQ8N7S6 290 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 ZNF519Q8TB69 540 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 RASD2Q96D21 266 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 SAMD8Q96LT4 415 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 Q96M85 177 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 GPX7Q96SL4 187 aaPredicted RBP15.57■□□□□ 0.08
CLN3-247ENST00000636351 FOXB1Q99853 325 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 ALG12Q9BV10 488 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 IFT27Q9BW83 186 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 TBC1D23Q9NUY8 699 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 KIF17Q9P2E2 1029 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 MGAT4BQ9UQ53 548 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 IER3IP1Q9Y5U9 82 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 CDH10Q9Y6N8 788 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 ARID1AO14497 2285 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 TLN2Q9Y4G6 2542 aa15.57■□□□□ 0.08
CLN3-247ENST00000636351 H7C1C5 153 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 DHHO43323 396 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 B4GALT1P15291 398 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 FASP25445 335 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 SDHAP31040 664 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 ZNF84P51523 738 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 FXYD6P3P58550 94 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 ACTR3P61158 418 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 LCN6P62502 163 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 ATP6AP1Q15904 470 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 CLEC12AQ5QGZ9 265 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 GPR139Q6DWJ6 353 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 RPL13AP3Q6NVV1 102 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 ZNF813Q6ZN06 617 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 TMEM179BQ7Z7N9 219 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 MAGEE2Q8TD90 523 aaPredicted RBP15.56■□□□□ 0.08
CLN3-247ENST00000636351 PYDC1Q8WXC3 89 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 BCL2L2Q92843 193 aaPredicted RBP15.56■□□□□ 0.08
CLN3-247ENST00000636351 MCHR2Q969V1 340 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 PLPPR2Q96GM1 343 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 ERMAPQ96PL5 475 aaPredicted RBP15.56■□□□□ 0.08
CLN3-247ENST00000636351 C1QTNF6Q9BXI9 259 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 DGCR6LQ9BY27 220 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 EGLN3Q9H6Z9 239 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 ZNF556Q9HAH1 456 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 ARMC1Q9NVT9 282 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 MAGED1Q9Y5V3 778 aaPredicted RBP15.56■□□□□ 0.08
CLN3-247ENST00000636351 SLC25A15Q9Y619 301 aa15.56■□□□□ 0.08
CLN3-247ENST00000636351 RAI1Q7Z5J4 1906 aaPredicted RBP15.56■□□□□ 0.08
CLN3-247ENST00000636351 ZANQ9Y493 2812 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 ARRDC5A6NEK1 342 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 SOCS2O14508 198 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 SOX14O95416 240 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 SLC2A10O95528 541 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 GSTM3P21266 225 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 NOS3P29474 1203 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 ZNF83P51522 516 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 NR1H2P55055 460 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 TUBA1BP68363 451 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 TUBA4AP68366 448 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 FMODQ06828 376 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 ZSCAN26Q16670 478 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 RFX4Q33E94 735 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 MESTQ5EB52 335 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 KLHL17Q6TDP4 642 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 ZNF704Q6ZNC4 412 aaPredicted RBP15.55■□□□□ 0.08
CLN3-247ENST00000636351 RASSF6Q6ZTQ3 369 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 TUBA1AQ71U36 451 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 FAM122BQ7Z309 247 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 HS3ST5Q8IZT8 346 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 CLDN22Q8N7P3 220 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 WDR31Q8NA23 367 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 ATG16L2Q8NAA4 619 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 TMEM171Q8WVE6 324 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 IGFBPL1Q8WX77 278 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 NSMAFQ92636 917 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 RBP7Q96R05 134 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 KCNK17Q96T54 332 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 FEVQ99581 238 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 MRPL13Q9BYD1 178 aaKnown RBP15.55■□□□□ 0.08
CLN3-247ENST00000636351 ESRP2Q9H6T0 727 aaKnown RBP15.55■□□□□ 0.08
CLN3-247ENST00000636351 OBP2BQ9NPH6 170 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 NRIP3Q9NQ35 241 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 HIVEP2P31629 2446 aa15.55■□□□□ 0.08
CLN3-247ENST00000636351 M0R1B8 84 aa15.54■□□□□ 0.08
CLN3-247ENST00000636351 ENTPD5O75356 428 aa15.54■□□□□ 0.08
CLN3-247ENST00000636351 PLAUP00749 431 aa15.54■□□□□ 0.08
CLN3-247ENST00000636351 SHQ1Q6PI26 577 aaKnown RBP15.54■□□□□ 0.08
CLN3-247ENST00000636351 LRFN4Q6PJG9 635 aa15.54■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 79.3 ms