RNA–Protein interactions for RNA: ENST00000627371.1

PTCD3-220, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 5 BASIC

Gene PTCD3, Length 210 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-220ENST00000627371 CYSRT1A8MQ03 144 aa17.73■□□□□ 0.43
PTCD3-220ENST00000627371 H7C1C5 153 aa17.73■□□□□ 0.43
PTCD3-220ENST00000627371 SOCS2O14508 198 aa17.73■□□□□ 0.43
PTCD3-220ENST00000627371 ENTPD5O75356 428 aa17.73■□□□□ 0.43
PTCD3-220ENST00000627371 TP53P04637 393 aaPredicted RBP17.73■□□□□ 0.43
PTCD3-220ENST00000627371 ANXA8P13928 327 aa17.73■□□□□ 0.43
PTCD3-220ENST00000627371 ZNF83P51522 516 aa17.73■□□□□ 0.43
PTCD3-220ENST00000627371 LCN6P62502 163 aa17.73■□□□□ 0.43
PTCD3-220ENST00000627371 BSPH1Q075Z2 132 aa17.73■□□□□ 0.43
PTCD3-220ENST00000627371 NRN1LQ496H8 165 aa17.73■□□□□ 0.43
PTCD3-220ENST00000627371 CLEC12AQ5QGZ9 265 aa17.73■□□□□ 0.43
PTCD3-220ENST00000627371 KLHL17Q6TDP4 642 aa17.73■□□□□ 0.43
PTCD3-220ENST00000627371 C10orf67Q8IYJ2 551 aa17.73■□□□□ 0.43
PTCD3-220ENST00000627371 OR8D4Q8NGM9 314 aa17.73■□□□□ 0.43
PTCD3-220ENST00000627371 LRTOMTQ8WZ04 291 aa17.73■□□□□ 0.43
PTCD3-220ENST00000627371 TMEM204Q9BSN7 226 aa17.73■□□□□ 0.43
PTCD3-220ENST00000627371 MOV10Q9HCE1 1003 aaKnown RBP17.73■□□□□ 0.43
PTCD3-220ENST00000627371 TBC1D23Q9NUY8 699 aa17.73■□□□□ 0.43
PTCD3-220ENST00000627371 VSX1Q9NZR4 365 aaPredicted RBP17.73■□□□□ 0.43
PTCD3-220ENST00000627371 DPRXA6NFQ7 191 aa17.72■□□□□ 0.43
PTCD3-220ENST00000627371 BHLHE40O14503 412 aa17.72■□□□□ 0.43
PTCD3-220ENST00000627371 IDH3BO43837 385 aa17.72■□□□□ 0.43
PTCD3-220ENST00000627371 SOX14O95416 240 aa17.72■□□□□ 0.43
PTCD3-220ENST00000627371 PRKACGP22612 351 aa17.72■□□□□ 0.43
PTCD3-220ENST00000627371 TUBA1BP68363 451 aa17.72■□□□□ 0.43
PTCD3-220ENST00000627371 TUBA4AP68366 448 aa17.72■□□□□ 0.43
PTCD3-220ENST00000627371 TMEM108Q6UXF1 575 aa17.72■□□□□ 0.43
PTCD3-220ENST00000627371 PTCHD4Q6ZW05 846 aa17.72■□□□□ 0.43
PTCD3-220ENST00000627371 TUBA1AQ71U36 451 aa17.72■□□□□ 0.43
PTCD3-220ENST00000627371 AMIGO2Q86SJ2 522 aa17.72■□□□□ 0.43
PTCD3-220ENST00000627371 SLC22A24Q8N4F4 322 aa17.72■□□□□ 0.43
PTCD3-220ENST00000627371 NANOS1Q8WY41 292 aaKnown RBP17.72■□□□□ 0.43
PTCD3-220ENST00000627371 NSMAFQ92636 917 aa17.72■□□□□ 0.43
PTCD3-220ENST00000627371 LURAP1Q96LR2 239 aa17.72■□□□□ 0.43
PTCD3-220ENST00000627371 C1QTNF6Q9BXI9 259 aa17.72■□□□□ 0.43
PTCD3-220ENST00000627371 ZNF556Q9HAH1 456 aa17.72■□□□□ 0.43
PTCD3-220ENST00000627371 CRNNQ9UBG3 495 aaPredicted RBP17.72■□□□□ 0.43
PTCD3-220ENST00000627371 REV1Q9UBZ9 1251 aa17.72■□□□□ 0.43
PTCD3-220ENST00000627371 UGT2A1Q9Y4X1 527 aa17.72■□□□□ 0.43
PTCD3-220ENST00000627371 ANKRD17O75179 2603 aaKnown RBP17.71■□□□□ 0.43
PTCD3-220ENST00000627371 SPG11Q96JI7 2443 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 ZNF503-AS2A6NEH8 195 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 H3BNX3 289 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 M0R1B8 84 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 FARS2O95363 451 aaKnown RBP17.71■□□□□ 0.43
PTCD3-220ENST00000627371 CD3EP07766 207 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 IGFBP1P08833 259 aaPredicted RBP17.71■□□□□ 0.43
PTCD3-220ENST00000627371 OR8G3PP0DMU2 310 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 HIST1H1CP16403 213 aaKnown RBP17.71■□□□□ 0.43
PTCD3-220ENST00000627371 PTAFRP25105 342 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 NOS3P29474 1203 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 CDKN2AP42771 156 aaKnown RBP17.71■□□□□ 0.43
PTCD3-220ENST00000627371 CAPZA2P47755 286 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 MRPS34P82930 218 aaKnown RBP17.71■□□□□ 0.43
PTCD3-220ENST00000627371 HIPK1Q86Z02 1210 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 FAM169BQ8N8A8 192 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 ATG16L2Q8NAA4 619 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 DNAJC9Q8WXX5 260 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 SNX18Q96RF0 628 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 TSSK6Q9BXA6 273 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 SYT4Q9H2B2 425 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 PLEKHF2Q9H8W4 249 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 ZNF224Q9NZL3 707 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 RNF115Q9Y4L5 304 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 LRBAP50851 2863 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 PLCE1Q9P212 2302 aa17.71■□□□□ 0.43
PTCD3-220ENST00000627371 NOTCH2Q04721 2471 aa17.71■□□□□ 0.42
PTCD3-220ENST00000627371 G3V2T6 193 aa17.7■□□□□ 0.42
PTCD3-220ENST00000627371 MGRN1O60291 552 aa17.7■□□□□ 0.42
PTCD3-220ENST00000627371 IGKV3-15P01624 115 aa17.7■□□□□ 0.42
PTCD3-220ENST00000627371 NPR2P20594 1047 aa17.7■□□□□ 0.42
PTCD3-220ENST00000627371 CD40P25942 277 aa17.7■□□□□ 0.42
PTCD3-220ENST00000627371 C3orf36Q3SXR2 165 aa17.7■□□□□ 0.42
PTCD3-220ENST00000627371 SLC36A3Q495N2 470 aa17.7■□□□□ 0.42
PTCD3-220ENST00000627371 FAHD1Q6P587 224 aa17.7■□□□□ 0.42
PTCD3-220ENST00000627371 ZNF704Q6ZNC4 412 aaPredicted RBP17.7■□□□□ 0.42
PTCD3-220ENST00000627371 FOXL2NBQ6ZUU3 175 aa17.7■□□□□ 0.42
PTCD3-220ENST00000627371 JAZF1Q86VZ6 243 aa17.7■□□□□ 0.42
PTCD3-220ENST00000627371 SKA3Q8IX90 412 aa17.7■□□□□ 0.42
PTCD3-220ENST00000627371 LNX2Q8N448 690 aa17.7■□□□□ 0.42
PTCD3-220ENST00000627371 OR2T33Q8NG76 320 aa17.7■□□□□ 0.42
PTCD3-220ENST00000627371 TEX47Q8TBZ9 253 aa17.7■□□□□ 0.42
PTCD3-220ENST00000627371 NABP1Q96AH0 204 aa17.7■□□□□ 0.42
PTCD3-220ENST00000627371 CENPNQ96H22 339 aaPredicted RBP17.7■□□□□ 0.42
PTCD3-220ENST00000627371 B3GNT2Q9NY97 397 aa17.7■□□□□ 0.42
PTCD3-220ENST00000627371 KIF17Q9P2E2 1029 aa17.7■□□□□ 0.42
PTCD3-220ENST00000627371 BAIAP2Q9UQB8 552 aa17.7■□□□□ 0.42
PTCD3-220ENST00000627371 POLQO75417 2590 aa17.7■□□□□ 0.42
PTCD3-220ENST00000627371 H3BN98 237 aa17.69■□□□□ 0.42
PTCD3-220ENST00000627371 ABCD4O14678 606 aa17.69■□□□□ 0.42
PTCD3-220ENST00000627371 UBL3O95164 117 aa17.69■□□□□ 0.42
PTCD3-220ENST00000627371 PLAUP00749 431 aa17.69■□□□□ 0.42
PTCD3-220ENST00000627371 IGLV1-44P01699 117 aa17.69■□□□□ 0.42
PTCD3-220ENST00000627371 HLA-HP01893 362 aa17.69■□□□□ 0.42
PTCD3-220ENST00000627371 CBR1P16152 277 aa17.69■□□□□ 0.42
PTCD3-220ENST00000627371 CTLA4P16410 223 aa17.69■□□□□ 0.42
PTCD3-220ENST00000627371 ZNF23P17027 643 aa17.69■□□□□ 0.42
PTCD3-220ENST00000627371 CDAP32320 146 aa17.69■□□□□ 0.42
PTCD3-220ENST00000627371 ARR3P36575 388 aa17.69■□□□□ 0.42
PTCD3-220ENST00000627371 GSG1Q2KHT4 349 aa17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms