RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 ARHGAP19Q14CB8 494 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 PDK4Q16654 411 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 KCTD21Q4G0X4 260 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 SMUG1Q53HV7 270 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 RIPPLY2Q5TAB7 128 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 PRMT9Q6P2P2 845 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 DUX4L9Q6RFH8 374 aaPredicted RBP0.94□□□□□ -2.26
SCN1A-208ENST00000625916 KDM7AQ6ZMT4 941 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 LINC00336Q6ZUF6 198 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 HDDC2Q7Z4H3 204 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 CALHM1Q8IU99 346 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 PUSL1Q8N0Z8 303 aaKnown RBP0.94□□□□□ -2.26
SCN1A-208ENST00000625916 MIR7-3HGQ8N6C7 128 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 LRRC52Q8N7C0 313 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 ZNF557Q8N988 423 aaPredicted RBP0.94□□□□□ -2.26
SCN1A-208ENST00000625916 OR2G2Q8NGZ5 317 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 COQ8AQ8NI60 647 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 LKAAEAR1Q8TD35 194 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 MAGEE2Q8TD90 523 aaPredicted RBP0.94□□□□□ -2.26
SCN1A-208ENST00000625916 MS4A4EQ96PG1 132 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 RBM14Q96PK6 669 aaKnown RBP0.94□□□□□ -2.26
SCN1A-208ENST00000625916 OR8B4Q96RC9 309 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 KLF6Q99612 283 aaPredicted RBP0.94□□□□□ -2.26
SCN1A-208ENST00000625916 RARRES2Q99969 163 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 KCTD14Q9BQ13 255 aaPredicted RBP0.94□□□□□ -2.26
SCN1A-208ENST00000625916 SLC25A2Q9BXI2 301 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 TMEM59Q9BXS4 323 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 PARP12Q9H0J9 701 aaKnown RBP0.94□□□□□ -2.26
SCN1A-208ENST00000625916 DDX19AQ9NUU7 478 aaKnown RBP0.94□□□□□ -2.26
SCN1A-208ENST00000625916 TAS2R3Q9NYW6 316 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 PSG8Q9UQ74 426 aa0.94□□□□□ -2.26
SCN1A-208ENST00000625916 ZNF407Q9C0G0 2248 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 TNS2Q63HR2 1409 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 TRAV39A0A0B4J263 110 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 CHST1O43916 411 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 TBX19O60806 448 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 DEDDO75618 318 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 RP2O75695 350 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 ERLIN2O94905 339 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 RAB3DO95716 219 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 APCSP02743 223 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 FGF1P05230 155 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 RPA2P15927 270 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 ATP5C1P36542 298 aaKnown RBP0.93□□□□□ -2.26
SCN1A-208ENST00000625916 FDFT1P37268 417 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 OPRD1P41143 372 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 PSMD8P48556 350 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 RORCP51449 518 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 ZNF616Q08AN1 781 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 IFT88Q13099 833 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 MAB21L1Q13394 359 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 RGNQ15493 299 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 SNRNP35Q16560 246 aaKnown RBP0.93□□□□□ -2.26
SCN1A-208ENST00000625916 SFT2D3Q587I9 215 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 PHYHD1Q5SRE7 291 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 AP1ARQ63HQ0 302 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 OR4F3Q6IEY1 312 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 ZFP1Q6P2D0 407 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 TMEM135Q86UB9 458 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 OAFQ86UD1 273 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 MFSD9Q8NBP5 474 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 NOXO1Q8NFA2 376 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 OR9A2Q8NGT5 310 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 LINC01560Q8TB33 94 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 C15orf40Q8WUR7 153 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 TBRG4Q969Z0 631 aaKnown RBP eCLIP0.93□□□□□ -2.26
SCN1A-208ENST00000625916 CREB3L1Q96BA8 519 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 HSFY1Q96LI6 401 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 ZNF681Q96N22 645 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 SLC38A2Q96QD8 506 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 P2RX4Q99571 388 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 FAIM2Q9BWQ8 316 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 TEKT3Q9BXF9 490 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 RPF2Q9H7B2 306 aaKnown RBP0.93□□□□□ -2.26
SCN1A-208ENST00000625916 UBE2ZQ9H832 354 aaPredicted RBP0.93□□□□□ -2.26
SCN1A-208ENST00000625916 PALMDQ9NP74 551 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 POLE4Q9NR33 117 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 FAM49BQ9NUQ9 324 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 MRPS18BQ9Y676 258 aaKnown RBP0.93□□□□□ -2.26
SCN1A-208ENST00000625916 IKBKGQ9Y6K9 419 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 LTBP4Q8N2S1 1624 aa0.93□□□□□ -2.26
SCN1A-208ENST00000625916 ADAMTS13Q76LX8 1427 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 A0A1B0GWJ7 208 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 RGSL1A5PLK6 1076 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 ZNF726A6NNF4 738 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 GOLGA8SH3BPF8 625 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 LGALS9O00182 355 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 ARPC3O15145 178 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 EIF3GO75821 320 aaKnown RBP eCLIP0.92□□□□□ -2.26
SCN1A-208ENST00000625916 RHOBTB1O94844 696 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 YIF1AO95070 293 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 IFNB1P01574 187 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 IGHV2-5P01817 119 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 IGHDP01880 384 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 HLA-DQA1P01909 254 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 ZNF806P0C7X5 589 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 UBTFL6P0CB48 400 aaPredicted RBP0.92□□□□□ -2.26
SCN1A-208ENST00000625916 HRH1P35367 487 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 TGFBR1P36897 503 aa0.92□□□□□ -2.26
SCN1A-208ENST00000625916 SERPINB5P36952 375 aa0.92□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms