RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 ZFAND2BQ8WV99 257 aa10.23□□□□□ -0.77
UPF3B-204ENST00000619445 LIPHQ8WWY8 451 aa10.23□□□□□ -0.77
UPF3B-204ENST00000619445 TAMM41Q96BW9 452 aa10.23□□□□□ -0.77
UPF3B-204ENST00000619445 SEPHS2Q99611 448 aa10.23□□□□□ -0.77
UPF3B-204ENST00000619445 SIAEQ9HAT2 523 aa10.23□□□□□ -0.77
UPF3B-204ENST00000619445 HINT3Q9NQE9 182 aaKnown RBP10.23□□□□□ -0.77
UPF3B-204ENST00000619445 METRNQ9UJH8 293 aa10.23□□□□□ -0.77
UPF3B-204ENST00000619445 WNK2Q9Y3S1 2297 aa10.23□□□□□ -0.77
UPF3B-204ENST00000619445 SVEP1Q4LDE5 3571 aa10.23□□□□□ -0.77
UPF3B-204ENST00000619445 IGLV3-9A0A075B6K5 115 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 A0A0G2JND7 137 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 C17orf100A8MU93 164 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 KPNA4O00629 521 aaPredicted RBP10.22□□□□□ -0.77
UPF3B-204ENST00000619445 EDF1O60869 148 aaKnown RBP10.22□□□□□ -0.77
UPF3B-204ENST00000619445 LYPD3O95274 346 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 APLNRP35414 380 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 GUCA1AP43080 201 aaPredicted RBP10.22□□□□□ -0.77
UPF3B-204ENST00000619445 ALDH3B1P43353 468 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 ZNF133P52736 654 aaPredicted RBP10.22□□□□□ -0.77
UPF3B-204ENST00000619445 MRPS34P82930 218 aaKnown RBP10.22□□□□□ -0.77
UPF3B-204ENST00000619445 HSF2Q03933 536 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 C10orf128Q5T292 105 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 FAM205BPQ63HN1 556 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 ZNF584Q8IVC4 421 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 PCYOX1LQ8NBM8 494 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 RBM15BQ8NDT2 890 aaKnown RBP10.22□□□□□ -0.77
UPF3B-204ENST00000619445 CPEB3Q8NE35 698 aaKnown RBP10.22□□□□□ -0.77
UPF3B-204ENST00000619445 MCHR2Q969V1 340 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 TMEM186Q96B77 213 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 SGTBQ96EQ0 304 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 SOX7Q9BT81 388 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 MRPL13Q9BYD1 178 aaKnown RBP10.22□□□□□ -0.77
UPF3B-204ENST00000619445 RACGAP1Q9H0H5 632 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 NANOGQ9H9S0 305 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 NPHS2Q9NP85 383 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 INIPQ9NRY2 104 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 TAAR3PQ9P1P4 343 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 AP3M1Q9Y2T2 418 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 SH3GLB1Q9Y371 365 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 MED31Q9Y3C7 131 aa10.22□□□□□ -0.77
UPF3B-204ENST00000619445 TRAV20A0A0B4J274 112 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 H3BSA7 217 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 HAX1O00165 279 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 PPIHO43447 177 aaKnown RBP10.21□□□□□ -0.78
UPF3B-204ENST00000619445 OR7A10O76100 309 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 HPXP02790 462 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 THY1P04216 161 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 LCKP06239 509 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 MSMBP08118 114 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 TROVE2P10155 538 aaKnown RBP eCLIP10.21□□□□□ -0.78
UPF3B-204ENST00000619445 ACADSP16219 412 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 FUT1P19526 365 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 DRD4P21917 467 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 IL2RGP31785 369 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 LIPAP38571 399 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 UCP2P55851 309 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 MYBPC1Q00872 1141 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 RPL18Q07020 188 aaKnown RBP10.21□□□□□ -0.78
UPF3B-204ENST00000619445 CCNIQ14094 377 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 SELPLGQ14242 412 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 MELKQ14680 651 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 TRIP10Q15642 601 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 MSMPQ1L6U9 139 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 ANKDD1AQ495B1 522 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 NANOGP8Q6NSW7 305 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 SHQ1Q6PI26 577 aaKnown RBP10.21□□□□□ -0.78
UPF3B-204ENST00000619445 CARM1Q86X55 608 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 RBM45Q8IUH3 476 aaKnown RBP10.21□□□□□ -0.78
UPF3B-204ENST00000619445 ALDH16A1Q8IZ83 802 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 LRRC17Q8N6Y2 441 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 TMEM239Q8WW34 195 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 ASB10Q8WXI3 467 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 LRRC58Q96CX6 371 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 RAB39BQ96DA2 213 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 TIMD4Q96H15 378 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 SH3GL3Q99963 347 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 PRSS27Q9BQR3 290 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 CCNB1IP1Q9NPC3 277 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 MEPEQ9NQ76 525 aaPredicted RBP10.21□□□□□ -0.78
UPF3B-204ENST00000619445 CYSLTR2Q9NS75 346 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 ZNF275Q9NSD4 429 aaPredicted RBP10.21□□□□□ -0.78
UPF3B-204ENST00000619445 GID8Q9NWU2 228 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 EIF3KQ9UBQ5 218 aaKnown RBP10.21□□□□□ -0.78
UPF3B-204ENST00000619445 CGGBP1Q9UFW8 167 aaPredicted RBP10.21□□□□□ -0.78
UPF3B-204ENST00000619445 RIMS3Q9UJD0 308 aa10.21□□□□□ -0.78
UPF3B-204ENST00000619445 LYNX1G3V0Z9 82 aa10.2□□□□□ -0.78
UPF3B-204ENST00000619445 TSPAN19P0C672 248 aa10.2□□□□□ -0.78
UPF3B-204ENST00000619445 PATE4P0C8F1 98 aa10.2□□□□□ -0.78
UPF3B-204ENST00000619445 LYNX1P0DP58 116 aa10.2□□□□□ -0.78
UPF3B-204ENST00000619445 TCN1P20061 433 aaPredicted RBP10.2□□□□□ -0.78
UPF3B-204ENST00000619445 CRYBB2P43320 205 aa10.2□□□□□ -0.78
UPF3B-204ENST00000619445 GZMMP51124 257 aa10.2□□□□□ -0.78
UPF3B-204ENST00000619445 SEC24CP53992 1094 aa10.2□□□□□ -0.78
UPF3B-204ENST00000619445 UGT2B15P54855 530 aa10.2□□□□□ -0.78
UPF3B-204ENST00000619445 PCBD1P61457 104 aa10.2□□□□□ -0.78
UPF3B-204ENST00000619445 SLC3A1Q07837 685 aa10.2□□□□□ -0.78
UPF3B-204ENST00000619445 ST3GAL3Q11203 375 aa10.2□□□□□ -0.78
UPF3B-204ENST00000619445 MAD2L1BPQ15013 274 aaPredicted RBP10.2□□□□□ -0.78
UPF3B-204ENST00000619445 ZNF718Q3SXZ3 478 aa10.2□□□□□ -0.78
UPF3B-204ENST00000619445 ZMAT1Q5H9K5 638 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms