RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 MAGEE2Q8TD90 523 aaPredicted RBP11.75□□□□□ -0.53
LINC00540-202ENST00000616974 NABP1Q96AH0 204 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 ADAD1Q96M93 576 aaKnown RBP11.75□□□□□ -0.53
LINC00540-202ENST00000616974 ZNF75AQ96N20 296 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 ZNF570Q96NI8 536 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 NMNAT3Q96T66 252 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 RERGLQ9H628 205 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 UBTD1Q9HAC8 227 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 REV1Q9UBZ9 1251 aa11.75□□□□□ -0.53
LINC00540-202ENST00000616974 SONP18583 2426 aaKnown RBP11.75□□□□□ -0.53
LINC00540-202ENST00000616974 SLC22A23A1A5C7 686 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 FAM171A2A8MVW0 826 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 STAMBPO95630 424 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 CCL2P13500 99 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 PPP3CBP16298 524 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 EPHA2P29317 976 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 CALCRP30988 508 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 SMIM11AP58511 58 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 PRPS1P60891 318 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 KRR1Q13601 381 aaKnown RBP11.74□□□□□ -0.53
LINC00540-202ENST00000616974 RFX4Q33E94 735 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 SLC36A3Q495N2 470 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 OR7E24Q6IFN5 339 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 ANKRD16Q6P6B7 361 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 ZNF704Q6ZNC4 412 aaPredicted RBP11.74□□□□□ -0.53
LINC00540-202ENST00000616974 ZNF584Q8IVC4 421 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 CYB561A3Q8NBI2 242 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 SDR9C7Q8NEX9 313 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 MUCL1Q96DR8 90 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 ERMAPQ96PL5 475 aaPredicted RBP11.74□□□□□ -0.53
LINC00540-202ENST00000616974 GPX7Q96SL4 187 aaPredicted RBP11.74□□□□□ -0.53
LINC00540-202ENST00000616974 TMEM204Q9BSN7 226 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 TMEM38BQ9NVV0 291 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 B3GNT2Q9NY97 397 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 GRHPRQ9UBQ7 328 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 ATP6V1G2-DDX39BF2Z307 99 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 GNGT2O14610 69 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 AKAP8O43823 692 aaKnown RBP11.74□□□□□ -0.53
LINC00540-202ENST00000616974 MITFO75030 526 aaPredicted RBP11.74□□□□□ -0.53
LINC00540-202ENST00000616974 CECR9P0C854 216 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 CD40P25942 277 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 PEX19P40855 299 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 GIPRP48546 466 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 IDH3GP51553 393 aaPredicted RBP11.74□□□□□ -0.53
LINC00540-202ENST00000616974 ACTR3P61158 418 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 BEX5Q5H9J7 111 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 ZNF362Q5T0B9 420 aaPredicted RBP11.74□□□□□ -0.53
LINC00540-202ENST00000616974 SLC25A47Q6Q0C1 308 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 SLC22A24Q8N4F4 322 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 C1orf162Q8NEQ5 155 aaPredicted RBP11.74□□□□□ -0.53
LINC00540-202ENST00000616974 GNPDA2Q8TDQ7 276 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 GIPC3Q8TF64 312 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 IFT27Q9BW83 186 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 MMADHCQ9H3L0 296 aaPredicted RBP11.74□□□□□ -0.53
LINC00540-202ENST00000616974 MOKQ9UQ07 419 aa11.74□□□□□ -0.53
LINC00540-202ENST00000616974 BHLHE40O14503 412 aa11.73□□□□□ -0.53
LINC00540-202ENST00000616974 CD79AP11912 226 aa11.73□□□□□ -0.53
LINC00540-202ENST00000616974 SDHAP31040 664 aa11.73□□□□□ -0.53
LINC00540-202ENST00000616974 TGFBR3Q03167 851 aa11.73□□□□□ -0.53
LINC00540-202ENST00000616974 MEP1BQ16820 701 aa11.73□□□□□ -0.53
LINC00540-202ENST00000616974 PAQR4Q8N4S7 273 aaPredicted RBP11.73□□□□□ -0.53
LINC00540-202ENST00000616974 AKAP1Q92667 903 aaKnown RBP eCLIP11.73□□□□□ -0.53
LINC00540-202ENST00000616974 NUAK2Q9H093 628 aa11.73□□□□□ -0.53
LINC00540-202ENST00000616974 OR10A4Q9H209 315 aa11.73□□□□□ -0.53
LINC00540-202ENST00000616974 SMURF2Q9HAU4 748 aa11.73□□□□□ -0.53
LINC00540-202ENST00000616974 EMC7Q9NPA0 242 aa11.73□□□□□ -0.53
LINC00540-202ENST00000616974 POFUT2Q9Y2G5 429 aa11.73□□□□□ -0.53
LINC00540-202ENST00000616974 AP4S1Q9Y587 144 aa11.73□□□□□ -0.53
LINC00540-202ENST00000616974 PRSS37A4D1T9 235 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 OR6C68A6NDL8 312 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 NPIPB13A6NJU9 1138 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 OR6C65A6NJZ3 312 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 NPIPB4C9JG80 1138 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 E2F6O75461 281 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 SOD3P08294 240 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 PSKH1P11801 424 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 C10orf128Q5T292 105 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 TMEM236Q5W0B7 351 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 ZNF627Q7L945 461 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 ZSCAN2Q7Z7L9 614 aaPredicted RBP11.72□□□□□ -0.53
LINC00540-202ENST00000616974 OR51L1Q8NGJ5 315 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 FBXO17Q96EF6 278 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 IL20Q9NYY1 176 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 DNAJB9Q9UBS3 223 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 CDH10Q9Y6N8 788 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 M0R129 80 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 MGRN1O60291 552 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 IGKV3-15P01624 115 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 CLUP10909 449 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 NOS3P29474 1203 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 RPS27P42677 84 aaKnown RBP11.72□□□□□ -0.53
LINC00540-202ENST00000616974 PTDSS1P48651 473 aaKnown RBP11.72□□□□□ -0.53
LINC00540-202ENST00000616974 DAPP51397 102 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 ZNF133P52736 654 aaPredicted RBP11.72□□□□□ -0.53
LINC00540-202ENST00000616974 MSMPQ1L6U9 139 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 DPY19L2P2Q6ZN68 376 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 ABHD12BQ7Z5M8 362 aaPredicted RBP11.72□□□□□ -0.53
LINC00540-202ENST00000616974 OR6V1Q8N148 313 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 C17orf78Q8N4C9 275 aa11.72□□□□□ -0.53
LINC00540-202ENST00000616974 PKP2Q99959 881 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms