RNA–Protein interactions for RNA: ENST00000613788.1

CD48-203, Transcript of CD48 molecule, humanhuman

TSL 1 (best) BASIC

Gene CD48, Length 1,500 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD48-203ENST00000613788 CLIC3O95833 236 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 MPGP29372 298 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 CENPAP49450 140 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 TGFBR3Q03167 851 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 FMODQ06828 376 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 CEACAM16Q2WEN9 425 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 SLC25A30Q5SVS4 291 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 MEDAGQ5VYS4 303 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 USP51Q70EK9 711 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 ZBTB46Q86UZ6 589 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 ENTHD1Q8IYW4 607 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 OR6V1Q8N148 313 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 RELL2Q8NC24 303 aaPredicted RBP12.96□□□□□ -0.33
CD48-203ENST00000613788 RHOXF1Q8NHV9 184 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 NSMAFQ92636 917 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 UBE2FQ969M7 185 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 LRRC46Q96FV0 321 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 Q96MT0 163 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 TSSK2Q96PF2 358 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 RACGAP1Q9H0H5 632 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 RASSF1Q9NS23 344 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 ZNF226Q9NYT6 803 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 JKAMPQ9P055 326 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 B9D1Q9UPM9 204 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 MOKQ9UQ07 419 aa12.96□□□□□ -0.33
CD48-203ENST00000613788 NBASA2RRP1 2371 aa12.96□□□□□ -0.34
CD48-203ENST00000613788 PRODHO43272 600 aa12.95□□□□□ -0.34
CD48-203ENST00000613788 CTLA4P16410 223 aa12.95□□□□□ -0.34
CD48-203ENST00000613788 SPI1P17947 270 aa12.95□□□□□ -0.34
CD48-203ENST00000613788 BLVRAP53004 296 aa12.95□□□□□ -0.34
CD48-203ENST00000613788 SH3BGRP55822 239 aaPredicted RBP12.95□□□□□ -0.34
CD48-203ENST00000613788 NXNL2Q5VZ03 156 aa12.95□□□□□ -0.34
CD48-203ENST00000613788 ZNF474Q6S9Z5 364 aaPredicted RBP12.95□□□□□ -0.34
CD48-203ENST00000613788 LINGO2Q7L985 606 aa12.95□□□□□ -0.34
CD48-203ENST00000613788 GLB1L2Q8IW92 636 aa12.95□□□□□ -0.34
CD48-203ENST00000613788 GABRG1Q8N1C3 465 aa12.95□□□□□ -0.34
CD48-203ENST00000613788 ZNF808Q8N4W9 903 aaPredicted RBP12.95□□□□□ -0.34
CD48-203ENST00000613788 PROKR2Q8NFJ6 384 aa12.95□□□□□ -0.34
CD48-203ENST00000613788 OR9Q1Q8NGQ5 310 aa12.95□□□□□ -0.34
CD48-203ENST00000613788 OR51V1Q9H2C8 321 aa12.95□□□□□ -0.34
CD48-203ENST00000613788 MED20Q9H944 212 aa12.95□□□□□ -0.34
CD48-203ENST00000613788 CLN6Q9NWW5 311 aa12.95□□□□□ -0.34
CD48-203ENST00000613788 ELOVL5Q9NYP7 299 aa12.95□□□□□ -0.34
CD48-203ENST00000613788 TAS2R16Q9NYV7 291 aa12.95□□□□□ -0.34
CD48-203ENST00000613788 IGKV1D-43A0A0B4J1Z2 117 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 SNTNA6NMZ2 147 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 ZNF99A8MXY4 864 aaPredicted RBP12.94□□□□□ -0.34
CD48-203ENST00000613788 J3QKU1 62 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 DCTN6O00399 190 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 ZG16O60844 167 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 GNAO1P09471 354 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 PLA2G2AP14555 144 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 ISL1P61371 349 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 GLO1Q04760 184 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 ETFDHQ16134 617 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 OCLNQ16625 522 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 KLHL12Q53G59 568 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 SLC35D3Q5M8T2 416 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 AADACL4Q5VUY2 407 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 MYO7BQ6PIF6 2116 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 THAP5Q7Z6K1 395 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 GID4Q8IVV7 300 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 RFKQ969G6 155 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 ZNF837Q96EG3 531 aaPredicted RBP12.94□□□□□ -0.34
CD48-203ENST00000613788 HCAR1Q9BXC0 346 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 HDHD5Q9BXW7 423 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 ANKRD60Q9BZ19 345 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 SEC61A2Q9H9S3 476 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 KCNJ16Q9NPI9 418 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 COA3Q9Y2R0 106 aaPredicted RBP12.94□□□□□ -0.34
CD48-203ENST00000613788 ALPK2Q86TB3 2170 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 ZNF462Q96JM2 2506 aa12.94□□□□□ -0.34
CD48-203ENST00000613788 IGLV1-36A0A0B4J1U3 117 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 A0A1W2PPL8 197 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 CIB4A0PJX0 185 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 GLCEO94923 617 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 GYPBP06028 91 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 CLUP10909 449 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 GABRB1P18505 474 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 NPR2P20594 1047 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 IGHV1-2P23083 117 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 MYF6P23409 242 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 LAP3P28838 519 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 ASCL1P50553 236 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 RPS7P62081 194 aaKnown RBP12.93□□□□□ -0.34
CD48-203ENST00000613788 MAD2L1BPQ15013 274 aaPredicted RBP12.93□□□□□ -0.34
CD48-203ENST00000613788 OR7E24Q6IFN5 339 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 MEPCEQ7L2J0 689 aaKnown RBP12.93□□□□□ -0.34
CD48-203ENST00000613788 ZNF433Q8N7K0 673 aaPredicted RBP12.93□□□□□ -0.34
CD48-203ENST00000613788 FOXB1Q99853 325 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 SLC22A31A6NKX4 558 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 FAM90A27PA6NNH2 459 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 FAM171A2A8MVW0 826 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 PYCARD-AS1I3L0S3 204 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 DENRO43583 198 aaKnown RBP12.93□□□□□ -0.34
CD48-203ENST00000613788 CLDN14O95500 239 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 HLA-DQA2P01906 255 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 ITGA5P08648 1049 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 COX5AP20674 150 aa12.93□□□□□ -0.34
CD48-203ENST00000613788 FMO3P31513 532 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms